get_all_pathway_net_index: Create an index for all KEGG pathway networks

In ReporterScore: Generalized Reporter Score-Based Enrichment Analysis for Omics Data

Create an index for all KEGG pathway networks

Description

Create an index for all KEGG pathway networks

Usage

get_all_pathway_net_index(pathway_xml_ls = NULL, org = NULL)

Arguments

pathway_xml_ls	A list of KEGG pathway XML files, where each element is a 'tbl_graph' or 'igraph' object.
org	Character, the KEGG organism code (e.g., "hsa" for human). If 'NULL', uses "ko" as the default prefix for pathway IDs.

Value

A data frame containing indices for all pathways, including pathway IDs and their attributes.

ReporterScore documentation built on Feb. 20, 2026, 5:08 p.m.