| buildBO | Bayesian Optimization Model Interface |
| buildCVModel | buildCVModel |
| buildEnsembleStack | Ensemble: Stacking |
| buildGaussianProcess | Gaussian Process Model Interface |
| buildKriging | Build Kriging Model |
| buildKrigingDACE | Build DACE model |
| buildLasso | Lasso Model Interface |
| buildLM | Linear Model Interface |
| buildLOESS | Build LOESS Model |
| buildPCA | buildPCA |
| buildRandomForest | Random Forest Interface |
| buildRanger | ranger Interface |
| buildrsdummy | Build random search dummy model |
| buildRSM | Build Response Surface Model |
| buildTreeModel | buildTreeModel |
| calculationBarthMuschelknautz | Cyclone Simulation: Barth/Muschelknautz |
| calculationMothes | Cyclone Simulation: Mothes |
| checkArrival | checkArrival |
| checkFeasibilityNlopGnIngres | Check feasibility for NLOPT_GN_ISRES |
| checkForNAs | Check for NAs in x lower and upper |
| checkFunEvalsDesignSize | Check funEvals Setting against designSize |
| checkInputDimensionsionalityCorrect | Check Dimensions of spotInputs |
| checkInputTypesInControl | Check input types in the spotControl list. |
| checkLowerSmallerThanUpper | #' Check That Lower and Upper are not Equal #' #' If any... |
| checkTypesOfInput | Check Input Types |
| checkVerbosityLevels | Check correct verbosity levels |
| code2nat | Transform coded values to natural values |
| corrcubic | Correlation: Cubic |
| correxp | Correlation: Exp |
| correxpg | Correlation: Expg |
| corrgauss | Correlation: Gauss |
| corrkriging | Correlation: Kriging |
| corrlin | Correlation: Lin |
| corrnoisygauss | Correlation: Noisy Gauss |
| corrnoisykriging | Correlation: Noisy Kriging |
| corrspherical | Correlation: Spherical |
| corrspline | Correlation: Spline |
| daceEvalFit | Evaluate DACE fit |
| daceFixTheta | Fix model parameters DACE |
| daceGetFit | Get DACE fit |
| daceLikelihood | Wrapper for Maximum Likelihood Estimation |
| daceObjfunc | DACE objective function |
| dacePrepareFit | Prepare DACE fit |
| daceStartParameters | Start parameter setup DACE |
| dataGasSensor | Gas Sensor Data |
| descentSpotRSM | Descent RSM model |
| designLHD | Latin Hypercube Design Generator |
| designLHDNorm | Normalized LHD Design |
| designUniformRandom | Uniform Design Generator |
| diff0 | diff0 |
| doParallel | Parallel execution of code, dependent on the operating system |
| duplicateAndReplicateHandling | duplicateAndReplicateHandling |
| evaluateModel | Evaluate Model |
| expectedImprovement | Expected Improvement |
| funBard | funBard (No. 14, More No. 8) |
| funBeale | funBeale (No.11, More No. 5) |
| funBox3d | funbox3D (No. 18, More No. 12) |
| funBranin | funBranin (No. 1) |
| funBrownBs | funbrownBs (No. 10, More No. 4) |
| funCosts | funCosts |
| funCyclone | Objective function - Cyclone Simulation: Barth/Muschelknautz |
| funError | funError |
| funFreudRoth | funFreudRoth (No. 8, More No. 2) |
| funGauss | funGauss (No. 15, More No. 9) |
| funGoldsteinPrice | Goldstein-Price Test Function (No. 5) |
| funGulf | funGulf (No.17, More No. 11) |
| funHelical | funHelical (No. 13, More No. 7) |
| funIshigami | Ishigami Test Function (No. 7) |
| funJennSamp | funJennSamp (No. 12, More No 6) |
| funMeyer | funMeyer (No. 16, More No. 10) |
| funMoo | funMoo |
| funNoise | funNoise |
| funOptimLecture | funOptimLecture |
| funPowellBs | funPowellBs (No. 9, More No. 3) |
| funPowellS | funPowellS (No. 19, More No. 13) |
| funRosen | funRosen (No. 2, More No. 1) |
| funRosen2 | funRosen2 (No. 2a) |
| funShiftedSphere | funShiftedSphere (No. 4) |
| funSoblev99 | Sobol and Levitan Test Function (No. 6) |
| funSphere | funSphere (No. 3) |
| funSring | funSring |
| getCorrelationMatrix | getCorrelationMatrix |
| getCosts | getCosts |
| getMultiStartPoints | Get Multi Start Points |
| getNatDesignFromCoded | Get natural parameter values from coded +-1 representation |
| getPerformanceStats | get performance stats |
| getPositions | get impute positions |
| getPower | getPower |
| getReplicates | get number of replicates |
| getSampleSize | getSampleSize |
| handleNAsKrigingWorst | handleNAsKrigingWorst |
| handleNAsMax | handleNAsMax |
| handleNAsMean | handleNAsMean |
| imputeY | Impute NAs and Inf in y |
| infillEI | Expected Improvement Infill Criterion |
| infillExpectedImprovement | infillExpectedImprovement |
| infillGetFullPrediction | infillGetFullPrediction |
| initialInputCheck | initialInputCheck. Initial Input Check of Spot Configuration |
| init_ring | init_ring |
| krigingLikelihood | Calculate negative log-likelihood |
| linearAdaptedSE | linearAdaptedSE |
| makeMoreFunList | makeMoreFunList |
| makeSpotFunList | makeSpotFunList |
| maxNearestNeighbourDistance | maxNearestNeighbourDistance |
| normalizeMatrix | Normalize design matrix |
| normalizeMatrix2 | Normalize design 2 |
| objectiveFunctionEvaluation | objectiveFunctionEvaluation Objective Function Evaluation |
| obj.plgpEI | Wrapper for Expected improvement (Gramacy) |
| OCBA | Low Level OCBA |
| ocbaRanking | ocbaRanking |
| optimDE | Minimization by Differential Evolution |
| optimES | Evolution Strategy |
| optimGenoud | Minimization by GENetic Optimization Using Derivatives |
| optimLagp | Interface to minimization based on Gramacy's lagp package |
| optimLBFGSB | Minimization by L-BFGS-B |
| optimLHD | Minimization by Latin Hypercube Sampling |
| optimNLOPTR | optimNLOPTR. Minimization by NLOPT |
| optimRSfun | Random search surrogate-optimizer |
| perceptron | perceptron |
| plgpEI | Expected improvement (Gramacy) |
| plotBestObj | Plot Best Objective Value |
| plotData | Interpolated plot |
| plotFunction | Surface plot of a function |
| plotModel | Surface plot of a model |
| plotPCA | plotPCA |
| plotPCAvariance | plotPCAvariance |
| plotSingleDimFunction | plotSingleDimFunction |
| plot.spotRSM | Plot RSM model |
| plot.spotSeverity | Plot method for spotSeverity |
| plot.spotTreeModel | Plot rpart tree model |
| predict.cvModel | predict.cvModel |
| predict.dace | DACE predictor |
| predict.ensembleStack | Predict Stacked Ensemble |
| predict.kriging | Predict Kriging Model |
| predictKrigingReinterpolation | Predict Kriging Model (Re-interpolating) |
| predict.rsdummy | Predict random search dummy |
| predict.spotBOModel | Prediction method for bayesian optimization model |
| predict.spotGaussianProcessModel | Prediction method for Gaussian Process Model |
| predict.spotLassoModel | Prediction method for lasso model |
| predict.spotLinearModel | Prediction method for linear model |
| predict.spotLOESS | Predict loess model |
| predict.spotRandomForest | Prediction method for random forest |
| predict.spotRanger | Predictor for spotExtraTrees |
| predict.spotRSM | Predict RSM model |
| predict.spotTreeModel | Prediction method for rpart tree models |
| prepareBestObjectiveVal | Preprocess y Values to Plot Best Objective Value |
| print | Print Function DACE Kriging |
| print.spotBOModel | Print method for BO model |
| print.spotGaussianProcessModel | Print method for Gaussian Process Model |
| print.spotLassoModel | Print method for lasso model |
| print.spotLinearModel | Print method for linear model |
| print.spotLOESS | Print method for loess model |
| print.spotRandomForest | Print method for random forest |
| print.spotRanger | Print method for random forest |
| print.spotRSM | Print method for RSM model |
| print.spotSeverity | Print method for spotSeverity |
| print.spotTreeModel | Print method for rpart tree models |
| regpoly0 | Regression: Regpoly0 |
| regpoly1 | Regression: Regpoly1 |
| regpoly2 | Regression: Regpoly2 |
| repairNonNumeric | Repair Non-numeric Values |
| repeatsOCBA | Optimal Computing Budget Allocation |
| repmat | repmat |
| resBench01 | result from the vignette benchmark |
| resSpot | S-Ring Simulation Data Obtained With SPOT |
| resSpot2 | S-Ring Simulation Data Obtained With SPOT |
| ring | ring |
| runOptim | runOptim |
| runSpotBench | runSpotBench |
| sann2spot | Interface SANN to SPOT |
| satter | Satterthwaite Function |
| selectAll | selectAll |
| selectN | selectN. Select n Design Points |
| simulateFunction | simulateFunction |
| simulate.kriging | Kriging Simulation |
| simulationDecompose | Kriging Simulation: Decomposition |
| simulationSpectral | simulationSpectral |
| spot | spot |
| spotAlgEs | Evolution Strategy Implementation |
| spotAlgEsDominantReco | spotAlgEsDominantReco |
| spotAlgEsGetSuccessRate | get Success Rate |
| spotAlgEsHps | Termination hps |
| spotAlgEsIndividualInitial | Individual Initialization |
| spotAlgEsInitParentPop | Initialize Parent Population |
| spotAlgEsInterReco | spotAlgEsInterReco |
| spotAlgEsInterRecoBeSw02 | spotAlgEsInterRecoBeSw02 |
| spotAlgEsMarriage | Marriage |
| spotAlgEsMarriageWithReplace | Marriage with replace |
| spotAlgEsObjMutation | spotAlgEsObjMutation |
| spotAlgEsSelection | spotAlgEsSelection |
| spotAlgEsStratMutation | spotAlgEsStratMutation |
| spotAlgEsTermination | Termination |
| spotCleanup | Clean up |
| spotControl | spotControl |
| spotFillControlList | spotFillControlList |
| spotHelpBslash | Backslash operator. |
| spotLoop | Sequential Parameter Optimization Main Loop |
| SPOT-package | Sequential Parameter Optimization Toolbox |
| spotPlotErrors | spotPlotErrors |
| spotPlotPower | spotPlotPower |
| spotPlotSeverityBasic | spotPlotSeverityBasic |
| spotPlotTest | spotPlotTest |
| spotPower | spotPower |
| spotSeverity | spotSeverity |
| spotSeverityBasic | spotSeverityBasic |
| sring | sring |
| sringRes1 | S-Ring Simulation Data |
| sringRes2 | S-Ring Simulation Data |
| sringRes3 | S-Ring Simulation Data |
| thetaNugget | thetaNugget |
| thetaNuggetGradient | thetaNuggetGradient |
| transformX | Transform input |
| updateSeedFromXnew | update seed |
| vmessage | formatted output dependent on verbosity |
| wrapBatchTools | wrapBatchTools |
| wrapFunction | Function Evaluation Wrapper |
| wrapFunctionParallel | Parallelized Function Evaluation Wrapper |
| wrapSystemCommand | wrapSystemCommand |
| wrapSystem_parseMatrixToString | wrapSystem_parseMatrixToString |
