ISpatialDimPlot: Visualize clusters spatially and interactively

In Seurat: Tools for Single Cell Genomics

Visualize clusters spatially and interactively

Description

Visualize clusters spatially and interactively

Usage

ISpatialDimPlot(object, image = NULL, group.by = NULL, alpha = c(0.3, 1))

Arguments

object	A Seurat object
image	Name of the image to use in the plot
group.by	Name of meta.data column to group the data by
alpha	Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.

Value

Returns final plot as a ggplot object

Seurat documentation built on Nov. 18, 2023, 1:10 a.m.