IntegrateLayers: Integrate Layers

In Seurat: Tools for Single Cell Genomics

Integrate Layers

Description

Integrate Layers

Usage

IntegrateLayers(
  object,
  method,
  orig.reduction = "pca",
  assay = NULL,
  features = NULL,
  layers = NULL,
  scale.layer = "scale.data",
  ...
)

Arguments

object	A Seurat object
method	Integration method function
orig.reduction	Name of dimensional reduction for correction
assay	Name of assay for integration
features	A vector of features to use for integration
layers	Names of normalized layers in assay
scale.layer	Name(s) of scaled layer(s) in assay
...	Arguments passed on to method

Value

object with integration data added to it

Integration Method Functions

The following integration method functions are available: \Sexpr[stage=render,results=rd]{Seurat:::.rd_methods("integration")}

See Also

Writing integration method functions

Seurat documentation built on May 29, 2024, 4:20 a.m.