PlotClusterTree: Plot clusters as a tree

In Seurat: Tools for Single Cell Genomics

Plot clusters as a tree

Description

Plots previously computed tree (from BuildClusterTree)

Usage

PlotClusterTree(object, direction = "downwards", ...)

Arguments

object	Seurat object
direction	A character string specifying the direction of the tree (default is downwards) Possible options: "rightwards", "leftwards", "upwards", and "downwards".
...	Additional arguments to ape::plot.phylo

Value

Plots dendogram (must be precomputed using BuildClusterTree), returns no value

Examples

## Not run: 
if (requireNamespace("ape", quietly = TRUE)) {
  data("pbmc_small")
  pbmc_small <- BuildClusterTree(object = pbmc_small)
  PlotClusterTree(object = pbmc_small)
}

## End(Not run)

Seurat documentation built on May 29, 2024, 4:20 a.m.