SingleExIPlot: Plot a single expression by identity on a plot

In Seurat: Tools for Single Cell Genomics

Plot a single expression by identity on a plot

Description

Plot a single expression by identity on a plot

Usage

SingleExIPlot(
  data,
  idents,
  split = NULL,
  type = "violin",
  sort = FALSE,
  y.max = NULL,
  adjust = 1,
  pt.size = 0,
  alpha = 1,
  cols = NULL,
  seed.use = 42,
  log = FALSE,
  add.noise = TRUE,
  raster = NULL
)

Arguments

data	Data to plot
idents	Idents to use
split	Use a split violin plot
type	Make either a “ridge” or “violin” plot
sort	Sort identity classes (on the x-axis) by the average expression of the attribute being potted
y.max	Maximum Y value to plot
adjust	Adjust parameter for geom_violin
pt.size	Size of points for violin plots
alpha	Alpha vlaue for violin plots
cols	Colors to use for plotting
seed.use	Random seed to use. If NULL, don't set a seed
log	plot Y axis on log10 scale
add.noise	determine if adding small noise for plotting
raster	Convert points to raster format. Requires 'ggrastr' to be installed. default is NULL which automatically rasterizes if ggrastr is installed and number of points exceed 100,000.

Value

A ggplot-based Expression-by-Identity plot

Seurat documentation built on May 29, 2024, 4:20 a.m.