merge.SCTAssay: Merge SCTAssay objects

View source: R/objects.R

merge.SCTAssayR Documentation

Merge SCTAssay objects

Description

Merge SCTAssay objects

Usage

## S3 method for class 'SCTAssay'
merge(
  x = NULL,
  y = NULL,
  add.cell.ids = NULL,
  merge.data = TRUE,
  na.rm = TRUE,
  ...
)

Arguments

x

A Seurat object

y

A single Seurat object or a list of Seurat objects

add.cell.ids

A character vector of length(x = c(x, y)); appends the corresponding values to the start of each objects' cell names

merge.data

Merge the data slots instead of just merging the counts (which requires renormalization); this is recommended if the same normalization approach was applied to all objects

na.rm

If na.rm = TRUE, this will only preserve residuals that are present in all SCTAssays being merged. Otherwise, missing residuals will be populated with NAs.

...

Arguments passed to other methods


Seurat documentation built on May 29, 2024, 4:20 a.m.