FractionCountsInRegion: Fraction of counts in a genomic region

In Signac: Analysis of Single-Cell Chromatin Data

Fraction of counts in a genomic region

Description

Find the fraction of counts per cell that overlap a given set of genomic ranges

Usage

FractionCountsInRegion(object, regions, assay = NULL, ...)

Arguments

object	A Seurat object
regions	A GRanges object containing a set of genomic regions
assay	Name of assay to use
...	Additional arguments passed to CountsInRegion

Value

Returns a numeric vector

Examples

## Not run: 
FractionCountsInRegion(
  object = atac_small,
  assay = 'bins',
  regions = blacklist_hg19
)

## End(Not run)

Signac documentation built on Sept. 11, 2024, 9:30 p.m.