GetGRangesFromEnsDb: Extract genomic ranges from EnsDb object

Description Usage Arguments

View source: R/utilities.R

Description

Pulls the transcript information for all chromosomes from an EnsDb object. This wraps crunch and applies the extractor function to all chromosomes present in the EnsDb object.

Usage

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GetGRangesFromEnsDb(
  ensdb,
  standard.chromosomes = TRUE,
  biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
  verbose = TRUE
)

Arguments

ensdb

An EnsDb object

standard.chromosomes

Keep only standard chromosomes

biotypes

Biotypes to keep

verbose

Display messages


Signac documentation built on Dec. 11, 2021, 9:55 a.m.