GetGRangesFromEnsDb: Extract genomic ranges from EnsDb object

View source: R/utilities.R

GetGRangesFromEnsDbR Documentation

Extract genomic ranges from EnsDb object

Description

Pulls the transcript information for all chromosomes from an EnsDb object. This wraps biovizBase::crunch() and applies the extractor function to all chromosomes present in the EnsDb object.

Usage

GetGRangesFromEnsDb(
  ensdb,
  standard.chromosomes = TRUE,
  biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
  verbose = TRUE
)

Arguments

ensdb

An EnsDb object

standard.chromosomes

Keep only standard chromosomes

biotypes

Biotypes to keep

verbose

Display messages


Signac documentation built on April 1, 2026, 5:06 p.m.