GetGRangesFromEnsDb: Extract genomic ranges from EnsDb object
In Signac: Analysis of Single-Cell Chromatin Data
GetGRangesFromEnsDb R Documentation
Extract genomic ranges from EnsDb object
Description
Pulls the transcript information for all chromosomes from an EnsDb object.
This wraps crunch and applies the extractor
function to all chromosomes present in the EnsDb object.
Usage
GetGRangesFromEnsDb(
ensdb,
standard.chromosomes = TRUE,
biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
verbose = TRUE
)
Arguments
ensdb
An EnsDb object
standard.chromosomes
Keep only standard chromosomes
biotypes
Biotypes to keep
verbose
Display messages
Signac documentation built on Sept. 11, 2024, 9:30 p.m.
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| GetGRangesFromEnsDb | R Documentation |
Extract genomic ranges from EnsDb object
Description
Pulls the transcript information for all chromosomes from an EnsDb object.
This wraps crunch and applies the extractor
function to all chromosomes present in the EnsDb object.
Usage
GetGRangesFromEnsDb(
ensdb,
standard.chromosomes = TRUE,
biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
verbose = TRUE
)
Arguments
ensdb |
An EnsDb object |
standard.chromosomes |
Keep only standard chromosomes |
biotypes |
Biotypes to keep |
verbose |
Display messages |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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