GetMotifData: Retrieve a motif matrix

In Signac: Analysis of Single-Cell Chromatin Data

Retrieve a motif matrix

Description

Get motif matrix for given assay

Usage

GetMotifData(object, ...)

## S3 method for class 'Motif'
GetMotifData(object, slot = "data", ...)

## S3 method for class 'ChromatinAssay'
GetMotifData(object, slot = "data", ...)

## S3 method for class 'Seurat'
GetMotifData(object, assay = NULL, slot = "data", ...)

Arguments

object	A Seurat object
...	Arguments passed to other methods
slot	Information to pull from object (data, pwm, meta.data)
assay	Which assay to use. Default is the current active assay

Value

Returns a Seurat object

Examples

motif.obj <- SeuratObject::GetAssayData(
  object = atac_small[['peaks']], slot = "motifs"
)
GetMotifData(object = motif.obj)
GetMotifData(object = atac_small)

Signac documentation built on Sept. 11, 2024, 9:30 p.m.