Links: Get or set links information

In Signac: Analysis of Single-Cell Chromatin Data

Get or set links information

Description

Get or set the genomic link information for a Seurat object or ChromatinAssay

Usage

Links(object, ...)

Links(object, ...) <- value

## S3 method for class 'ChromatinAssay'
Links(object, ...)

## S3 method for class 'Seurat'
Links(object, ...)

## S3 replacement method for class 'ChromatinAssay'
Links(object, ...) <- value

## S3 replacement method for class 'Seurat'
Links(object, ...) <- value

Arguments

object	A Seurat object
...	Arguments passed to other methods
value	A GRanges object

Examples

Links(atac_small[["peaks"]])
Links(atac_small)
links <- Links(atac_small)
Links(atac_small[["peaks"]]) <- links
links <- Links(atac_small)
Links(atac_small) <- links

Signac documentation built on Sept. 11, 2024, 9:30 p.m.