MotifPlot: Plot DNA sequence motif

In Signac: Analysis of Single-Cell Chromatin Data

Plot DNA sequence motif

Description

Plot position weight matrix or position frequency matrix for different DNA sequence motifs.

Usage

MotifPlot(object, motifs, assay = NULL, use.names = TRUE, ...)

Arguments

object	A Seurat object
motifs	A list of motif IDs or motif names to plot
assay	Name of the assay to use
use.names	Use motif names stored in the motif object
...	Additional parameters passed to ggseqlogo

Value

Returns a ggplot object

Examples

motif.obj <- Motifs(atac_small)
MotifPlot(atac_small, motifs = head(colnames(motif.obj)))

Signac documentation built on Sept. 11, 2024, 9:30 p.m.