SetMotifData: Set motif data

In Signac: Analysis of Single-Cell Chromatin Data

Set motif data

Description

Set motif matrix for given assay

Usage

SetMotifData(object, ...)

## S3 method for class 'Motif'
SetMotifData(object, slot, new.data, ...)

## S3 method for class 'ChromatinAssay'
SetMotifData(object, slot, new.data, ...)

## S3 method for class 'Seurat'
SetMotifData(object, assay = NULL, ...)

Arguments

object	A Seurat object
...	Arguments passed to other methods
slot	Name of slot to use
new.data	motif matrix to add. Should be matrix or sparse matrix class
assay	Name of assay whose data should be set

Value

Returns a Seurat object

Examples

motif.obj <- SeuratObject::GetAssayData(
  object = atac_small[['peaks']], slot = "motifs"
)
SetMotifData(object = motif.obj, slot = 'data', new.data = matrix(1:2))
SetMotifData(
  object = atac_small[['peaks']], slot = 'data', new.data = matrix(1:2)
)
motif.matrix <- GetMotifData(object = atac_small)
SetMotifData(
object = atac_small, assay = 'peaks', slot = 'data', new.data = motif.matrix
)

Signac documentation built on Nov. 8, 2023, 5:07 p.m.