granges-methods: Access genomic ranges for ChromatinAssay objects

In Signac: Analysis of Single-Cell Chromatin Data

Access genomic ranges for ChromatinAssay objects

Description

Methods for accessing GRanges object information stored in a ChromatinAssay object.

Usage

## S4 method for signature 'ChromatinAssay'
granges(x, use.names = TRUE, use.mcols = FALSE, ...)

## S4 method for signature 'Seurat'
granges(x, use.names = TRUE, use.mcols = FALSE, ...)

Arguments

x	A ChromatinAssay object
use.names	Whether the names on the genomic ranges should be propagated to the returned object.
use.mcols	Not supported for ChromatinAssay objects
...	Additional arguments

Value

Returns a GRanges object

Functions

• granges(Seurat): method for Seurat objects

See Also

• granges in the GenomicRanges package.

• ChromatinAssay-class

Examples

granges(atac_small)

Signac documentation built on Sept. 11, 2024, 9:30 p.m.