inter-range-methods: Inter-range transformations for ChromatinAssay objects

In Signac: Analysis of Single-Cell Chromatin Data

Inter-range transformations for ChromatinAssay objects

Description

The range, reduce, gaps, disjoin, isDisjoint, disjointBins methods are available for ChromatinAssay objects.

Usage

## S4 method for signature 'ChromatinAssay'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'Seurat'
range(x, ..., with.revmap = FALSE, na.rm = FALSE)

## S4 method for signature 'ChromatinAssay'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'Seurat'
reduce(x, drop.empty.ranges = FALSE, ...)

## S4 method for signature 'ChromatinAssay'
gaps(x, start = NA, end = NA)

## S4 method for signature 'Seurat'
gaps(x, start = NA, end = NA)

## S4 method for signature 'ChromatinAssay'
disjoin(x, ...)

## S4 method for signature 'Seurat'
disjoin(x, ...)

## S4 method for signature 'ChromatinAssay'
isDisjoint(x, ...)

## S4 method for signature 'Seurat'
isDisjoint(x, ...)

## S4 method for signature 'ChromatinAssay'
disjointBins(x, ...)

## S4 method for signature 'Seurat'
disjointBins(x, ...)

Arguments

x	A ChromatinAssay object
...	Additional arguments
with.revmap	See inter-range-methods in the IRanges packages
na.rm	Ignored
drop.empty.ranges	See ?inter-range-methods
start, end	See ?inter-range-methods

Functions

• range(Seurat): method for Seurat objects

• reduce(ChromatinAssay): method for ChromatinAssay objects

• reduce(Seurat): method for Seurat objects

• gaps(ChromatinAssay): method for ChromatinAssay objects

• gaps(Seurat): method for Seurat objects

• disjoin(ChromatinAssay): method for ChromatinAssay objects

• disjoin(Seurat): method for Seurat objects

• isDisjoint(ChromatinAssay): method for ChromatinAssay objects

• isDisjoint(Seurat): method for Seurat objects

• disjointBins(ChromatinAssay): method for ChromatinAssay objects

• disjointBins(Seurat): method for Seurat objects

See Also

• inter-range-methods in the IRanges package.

• inter-range-methods in the GenomicRanges package

• ChromatinAssay-class

Signac documentation built on Sept. 11, 2024, 9:30 p.m.