Nothing
## ----nomessages, echo = FALSE-------------------------------------------------
knitr::opts_chunk$set(
warning = FALSE,
message = FALSE,
fig.height = 5,
fig.width = 5
)
options(digits=4)
par(mar=c(3,3,1,1)+.1)
## -----------------------------------------------------------------------------
library(SimDesign)
# SimFunctions()
Design <- createDesign(N = c(10,20,30))
## -----------------------------------------------------------------------------
Generate <- function(condition, fixed_objects) {
dat <- rnorm(condition$N)
dat
}
Analyse <- function(condition, dat, fixed_objects) {
ret <- c(p = t.test(dat)$p.value)
ret
}
Summarise <- function(condition, results, fixed_objects) {
ret <- EDR(results, alpha = .05)
ret
}
## ----include=FALSE------------------------------------------------------------
set.seed(1)
## ----eval=FALSE---------------------------------------------------------------
# Analyse <- function(condition, dat, fixed_objects) {
# if(condition$N == 30) stop('Danger Will Robinson!')
# ret <- c(p = t.test(dat)$p.value)
# ret
# }
#
# res <- runSimulation(Design, replications = 1000, save=TRUE, filename='my-simple-sim',
# generate=Generate, analyse=Analyse, summarise=Summarise,
# control = list(stop_on_fatal = TRUE))
## ----echo=FALSE---------------------------------------------------------------
Analyse <- function(condition, dat, fixed_objects) {
if(condition$N == 30) stop('Danger Will Robinson!')
ret <- c(p = t.test(dat)$p.value)
ret
}
# Default to runSimulation() has save = TRUE
res <- try(runSimulation(Design, replications = 1000, filename='my-simple-sim',
generate=Generate, analyse=Analyse, summarise=Summarise,
control = list(stop_on_fatal = TRUE)), silent = TRUE)
message('Row 3 in design was terminated because it had 50 consecutive errors. \n
Last error message was: \n\nManual Error : Danger Will Robinson!')
## -----------------------------------------------------------------------------
files <- dir()
files[grepl('SIMDESIGN', files)]
## -----------------------------------------------------------------------------
Analyse <- function(condition, dat, fixed_objects) {
ret <- c(p = t.test(dat)$p.value)
ret
}
res <- runSimulation(Design, replications = 1000, save=TRUE, filename='my-simple-sim',
generate=Generate, analyse=Analyse, summarise=Summarise)
## -----------------------------------------------------------------------------
files <- dir()
files[grepl('SIMDESIGN', files)]
files[grepl('my-simp', files)]
## ----include=FALSE------------------------------------------------------------
SimClean('my-simple-sim.rds')
## -----------------------------------------------------------------------------
# store_results=TRUE by default
res <- runSimulation(Design, replications = 3,
generate=Generate, analyse=Analyse, summarise=Summarise)
results <- SimResults(res)
results
## -----------------------------------------------------------------------------
res <- runSimulation(Design, replications = 1000, save_results=TRUE,
generate=Generate, analyse=Analyse, summarise=Summarise)
dir <- dir()
directory <- dir[grepl('SimDesign-results', dir)]
dir(directory)
## -----------------------------------------------------------------------------
row1 <- readRDS(paste0(directory, '/results-row-1.rds'))
str(row1)
row1$condition
head(row1$results)
## -----------------------------------------------------------------------------
# first row
row1 <- SimResults(res, which = 1)
str(row1)
## -----------------------------------------------------------------------------
input <- SimResults(res)
str(input)
## -----------------------------------------------------------------------------
SimClean(results = TRUE)
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