aliview | R Documentation |
This function uses AliView (Larsson, 2014) to visualize DNA sequences. The software must be installed on the computer.
aliview( x, aliview_exec = getOption("bioseq.aliview.exec", default = "aliview") )
x |
a DNA, RNA or AA vector.
Alternatively a |
aliview_exec |
a character string giving the path of the program. |
By default, the function assumes that the executable is installed
in a directory located on the PATH. Alternatively the user can provide
an absolute path to the executable (i.e. the location where the software
was installed/uncompressed). This information can be stored in the global
options settings using
options(bioseq.aliview.exec = "my_path_to_aliview")
.
Larsson, A. (2014). AliView: a fast and lightweight alignment viewer and editor for large data sets. Bioinformatics 30(22): 3276-3278.
Other GUI wrappers:
seaview()
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