seq_extract_position: Extract a region between two positions in sequences

In bioseq: A Toolbox for Manipulating Biological Sequences

Extract a region between two positions in sequences

Description

Extract a region between two positions in sequences

Usage

seq_extract_position(x, position_in, position_out)

Arguments

x	a DNA, RNA or AA vector.
position_in	an integer giving the position where to start to extract.
position_out	an integer giving the position where to stop to extract.

Value

A vector of same class as x.

See Also

stri_extract from stringi and str_extract from stringr for the underlying implementation.

Other string operations: seq-replace, seq_combine(), seq_count_pattern(), seq_crop_pattern(), seq_crop_position(), seq_detect_pattern(), seq_extract_pattern(), seq_remove_pattern(), seq_remove_position(), seq_replace_position(), seq_split_kmer(), seq_split_pattern()

Examples

x <- dna("ACGTTAGTGTAGCCGT", "CTCGAAATGA")
seq_extract_position(x, 3, 8)

bioseq documentation built on Sept. 6, 2022, 5:07 p.m.