as-tibble-ape: Convert DNAbin/AAbin to tibble

In bioseq: A Toolbox for Manipulating Biological Sequences

Convert DNAbin/AAbin to tibble

Description

These methods convert sequences from ape formats DNAbin and AAbin to tibbles.

Usage

as_tibble.DNAbin(x, label = "label", sequence = "sequence", ...)

as_tibble.AAbin(x, label = "label", sequence = "sequence", ...)

Arguments

x	a DNAbin or AAbin object.
label	Name of the column that stores the sequence labels in the returned tibble.
sequence	Name of the column that stores the sequences in the returned tibble.
...	Not used.

Value

A tibble with two columns (if name is not NULL, the default) or one column (otherwise).

See Also

Other conversions: as-tibble-bioseq, as_AAbin(), as_DNAbin(), as_aa(), as_dna(), as_rna(), as_seqinr_alignment()

Examples

require(ape)
require(tibble)
x <- rDNAbin(nrow = 10, ncol = 25)
as_tibble.DNAbin(x)

bioseq documentation built on Sept. 6, 2022, 5:07 p.m.