Man pages for bioseq
A Toolbox for Manipulating Biological Sequences

aaBuild an amino acid (AA) vector
aliviewAliView: DNA sequences viewer
alphabetsBiological alphabets
as_aaCoercion to an amino acid (AA) vector
as_AAbinCoerce to AAbin
as_AAbin.tbl_dfCoerce tibble to AAbin
as_dnaCoercion to DNA vector
as_DNAbinCoerce to DNAbin
as_DNAbin.tbl_dfCoerce tibble to DNAbin
as_rnaCoercion to RNA vector
as_seqinr_alignmentCoerce to seqinr alignment
as-tibble-apeConvert DNAbin/AAbin to tibble
as-tibble-bioseqConvert bioseq DNA, RNA and AA to tibble
bioseq-packagebioseq: A Toolbox for Manipulating Biological Sequences
dic_genetic_codesGenetic code tables
dnaBuild a DNA vector
fragilariaDNA sequences (rbcL) for various Fragilaria
genetic-codesGenetic code tables
internal-methodsInternal
is_aaTest if the object is an amino acid vector
is_dnaTest if the object is a DNA vector
is_rnaTest if the object is a RNA vector
new_aaAmino acid (AA) vector constructor
new_dnaDNA vector constructor
new_rnaRNA vector constructor
pillar_shaft.bioseq_aaInternal formatting
pillar_shaft.bioseq_dnaInternal formatting
pillar_shaft.bioseq_rnaInternal formatting
read_fastaRead sequences in FASTA format
rev_complementReverse and complement sequences
rnaBuild a RNA vector
seaviewSeaView: DNA sequences and phylogenetic tree viewer
seq_clusterCluster sequences by similarity
seq_combineCombine multiple sequences
seq_consensusFind a consensus sequence for a set of sequences.
seq_count_patternCount the number of matches in sequences
seq_crop_patternCrop sequences using delimiting patterns
seq_crop_positionCrop sequences between two positions
seq_detect_patternDetect the presence of patterns in sequences
seq_disambiguate_IUPACDisambiguate biological sequences
seq_extract_patternExtract matching patterns from sequences
seq_extract_positionExtract a region between two positions in sequences
seq_ncharCount the number of character in sequences
seq_nseqNumber of sequences in a vector
seq_remove_patternRemove matched patterns in sequences
seq_remove_positionRemove a region between two positions in sequences.
seq-replaceReplace matched patterns in sequences
seq_replace_positionReplace a region between two positions in sequences
seq_rev_translateReverse translate amino acid sequences
seq_spelloutSpell out sequences
seq_split_kmerSplit sequences into k-mers
seq_split_patternSplit sequences
seq_stat_gcCompute G+C content
seq_stat_propCompute proportions for characters
seq_translateTranslate DNA/RNA sequences into amino acids
transcriptionTranscribe DNA, reverse-transcribe RNA
validate_seqSequence validator
write_fastaWrite sequences in FASTA format
bioseq documentation built on Nov. 26, 2020, 9:07 a.m.