View source: R/seq_misc_operations.R
seq_spellout | R Documentation |
This function spells out nucleotides and amino acids in sequences.
seq_spellout(x, short = FALSE, collapse = " - ")
x |
a DNA, RNA or AA vector |
short |
logical. If TRUE, the function will return 3-letters short names for amino acids (ignored for DNA and RNA). |
collapse |
a character vector to separate the results.
Set to |
A character vector if collapse is not NULL
.
A list of character vectors otherwise.
Other op-misc:
seq_disambiguate_IUPAC()
,
seq_nchar()
,
seq_nseq()
,
seq_stat_gc()
,
seq_stat_prop()
x <- dna("ACGT") seq_spellout(x) x <- rna("ACGU") seq_spellout(x) x <- aa("ACGBTX") seq_spellout(x)
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