as-tibble-bioseq: Convert bioseq DNA, RNA and AA to tibble

In bioseq: A Toolbox for Manipulating Biological Sequences

Convert bioseq DNA, RNA and AA to tibble

Description

Convert bioseq DNA, RNA and AA to tibble

Usage

as_tibble.bioseq_dna(x, label = "label", sequence = "sequence", ...)

as_tibble.bioseq_rna(x, label = "label", sequence = "sequence", ...)

as_tibble.bioseq_aa(x, label = "label", sequence = "sequence", ...)

Arguments

x	a DNA, RNA or AA vector.
label	Name of the column that stores the sequence labels in the returned tibble.
sequence	Name of the column that stores the sequences in the returned tibble.
...	Not used.

Value

A tibble with two columns (if name is not NULL, the default) or one column (otherwise).

See Also

Other conversions: as-tibble-ape, as_AAbin(), as_DNAbin(), as_aa(), as_dna(), as_rna(), as_seqinr_alignment()

Examples

require(tibble)
x <- dna(A = "ACGTTAGTGTAGCCGT", B = "CTCGAAATGA", C = NA)
as_tibble(x)

bioseq documentation built on Sept. 6, 2022, 5:07 p.m.