seq_stat_gc: Compute G+C content
In bioseq: A Toolbox for Manipulating Biological Sequences
View source: R/seq_stat_operations.R
seq_stat_gc R Documentation
Compute G+C content
Description
Compute G+C content
Usage
seq_stat_gc(x)
Arguments
x
a DNA or RNA
Details
Ambiguous characters (other than S and W) are ignored.
Value
A numeric vector of G+C proportions.
See Also
Other op-misc:
seq_disambiguate_IUPAC(),
seq_nchar(),
seq_nseq(),
seq_spellout(),
seq_stat_prop()
Examples
x <- dna(c("ATGCAGA", "GGR-----","TTGCCTAGKTGAACC"))
seq_stat_gc(x)
bioseq documentation built on Sept. 6, 2022, 5:07 p.m.
R Package Documentation
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View source: R/seq_stat_operations.R
| seq_stat_gc | R Documentation |
Compute G+C content
Description
Compute G+C content
Usage
seq_stat_gc(x)
Arguments
x |
a DNA or RNA |
Details
Ambiguous characters (other than S and W) are ignored.
Value
A numeric vector of G+C proportions.
See Also
Other op-misc:
seq_disambiguate_IUPAC(),
seq_nchar(),
seq_nseq(),
seq_spellout(),
seq_stat_prop()
Examples
x <- dna(c("ATGCAGA", "GGR-----","TTGCCTAGKTGAACC"))
seq_stat_gc(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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