cghseg: Segmentation Methods for Array CGH Analysis
Version 1.0.2-1

cghseg is an R package dedicated to the analysis of CGH profiles using segmentation models.

AuthorFranck Picard, Mark Hoebeke, Emilie Lebarbier, Vincent Miele, Guillem Rigaill, Stephane Robin
Date of publication2016-01-03 10:39:51
MaintainerORPHANED
LicenseGPL (>= 2)
Version1.0.2-1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("cghseg")

Popular man pages

beta: Replace slot beta
calling: Replace slot calling
getbgoutliers: getbgoutliers
multiseg: Joint segmentation of multiple CGH profiles
nbprocs: Replace slot nbprocs
select: Replace slot select
simulprofiles: simulprofiles
See all...

All man pages Function index File listing

Man pages

alpha: Replace slot alpha
beta: Replace slot beta
calling: Replace slot calling
CGHdata-class: Class "CGHdata"
CGHoptions-class: Class "CGHoptions"
CGHresults-class: Class "CGHresults"
GCnorm: Replace slot GCnorm
getbgoutliers: getbgoutliers
getbp: Breakpoints frequencies
getlevels: Levels frequency
getmultiKmax: Determining the maximum number of segments for joint...
getsegprofiles: getsegprofiles
getuniKmax: Maximum number of segments per profile
itermax: Replace slot itermax
multiseg: Joint segmentation of multiple CGH profiles
nblevels: Replace slot nblevels
nbprocs: Replace slot nbprocs
select: Replace slot select
simulprofiles: simulprofiles
uniseg: Segmentation of univariate CGH profiles
wavenorm: Replace slot wavenorm

Functions

Files

src
src/colibri.cc
src/EM_init.cc
src/hybrid.cc
src/Makevars
src/numlib.h
src/compactEM_algo.cc
src/ApproxSeg_2.c
src/Segmentation_mixt.cc
src/ApproxSeg.h
src/Segmentation_mean.cc
src/Segmentation_mixt.h
src/Mstep.cc
src/cghseg_types.h
src/colibri.h
src/logdens.h
src/Rwrappers.cc
src/Rwrappers.h
src/helperfuncs.cc
src/compactEM_algo.h
src/usefullReadAndWrite.h
src/neighbors.h
src/lvinc.h
src/Estep.cc
src/lvinc.cc
src/liste.h
src/repmat.h
src/repmat.cc
src/Segmentation_ibp.cc
src/conv_hull.cc
src/Segmentation_ibp.h
src/compactEM_init.h
src/helperfuncs.h
src/LinDynProg.cc
src/conv_hull.h
src/compactEM_init.cc
src/neighbors.cc
src/EM_algo.h
src/EM_algo.cc
src/colibriAnalysis.cc
src/numlib.cc
src/Segmentation_mean.h
src/usefullReadAndWrite.cc
src/ApproxSeg.c
src/hybrid.h
src/liste.cc
src/polynome2.h
src/logdens.cc
src/Estep.h
src/EM_init.h
src/accessToR.cc
src/Mstep.h
src/LinDynProgMelange.cc
NAMESPACE
R
R/getbias.R
R/uniseg.R
R/multiseg.R
R/simulprofiles.R
R/multisegmixt.R
R/DP2EM.R
R/CGHdata.R
R/ILSclust.R
R/multisegmean.R
R/getuniKmax.R
R/unisegmean.R
R/Kselection.R
R/multisegout.R
R/CGHresults.R
R/golden.search.R
R/getmBIC.R
R/multisegclust.R
R/cghseg.R
R/PKselection.R
R/unisegclust.R
R/CGHoptions.R
R/getmultiKmax.R
R/unisegmixt.R
R/ILS.R
MD5
DESCRIPTION
man
man/multiseg.Rd
man/calling.Rd
man/getuniKmax.Rd
man/getbp.Rd
man/getsegprofiles.Rd
man/CGHresults-class.Rd
man/nbprocs.Rd
man/getmultiKmax.Rd
man/GCnorm.Rd
man/getbgoutliers.Rd
man/nblevels.Rd
man/uniseg.Rd
man/alpha.Rd
man/CGHoptions-class.Rd
man/beta.Rd
man/simulprofiles.Rd
man/getlevels.Rd
man/itermax.Rd
man/wavenorm.Rd
man/CGHdata-class.Rd
man/select.Rd
INDEX
cghseg documentation built on May 20, 2017, 4:40 a.m.

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