getbgoutliers: getbgoutliers

Description Usage Arguments Value Author(s) References Examples

Description

Identification of outliers in the background intensity

Usage

1
getbgoutliers(.Object,CGHr.smooth,fdr)

Arguments

.Object

an object of the CGHresults class for which CGHo["wavenorm"]="position"

CGHr.smooth

an object of the CGHresults class for which CGHo["wavenorm"] is "spline"

fdr

fdr level to control for multiple testing

Value

bgoutliers

dataframe containing background outliers

Author(s)

F. Picard, E. Lebarbier, M. Hoebeke, G. Rigaill, B. Thiam, S. Robin

References

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
#set.seed(1)
#simul          = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
#CGHd           = new("CGHdata",Y=simul$Y)
#CGHo           = new("CGHoptions")
#calling(CGHo)  = FALSE
#wavenorm(CGHo) = "position"
#CGHr.pos       = multiseg(CGHd,CGHo)
#wavenorm(CGHo) = "spline"
#CGHr.spl       = multiseg(CGHd,CGHo)
#getbgoutliers(CGHr.pos,CGHr.spl,fdr=0.05)


Search within the cghseg package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.