beta: Replace slot beta

Description Arguments Details Author(s) References See Also Examples

Description

changes slot beta of a CGHoptions object

Arguments

.Object

an object of the CGHoptions class

Details

CGHo["beta"] sets the proportion of each Kmax in multiKmax. If uniKmax[[i]] is the Kmax of profile i then

\code{multiKmax} = β \times ∑_i \code{uniKmax[[i]]}

MultiKmax must be greater than the number of profiles, but should not be too small since it should be greater than the selected number of segments (unknown).

Author(s)

F. Picard, E. Lebarbier, M. Hoebeke, G. Rigaill, B. Thiam, S. Robin

References

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

See Also

alpha, getmultiKmax

Examples

1
2
3
4
5
#set.seed(1)
#simul       = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
#CGHd        = new("CGHdata",Y=simul$Y)
#CGHo        = new("CGHoptions")
#beta(CGHo) = 0.5


Search within the cghseg package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.