getbp: Breakpoints frequencies

Description Usage Arguments Value Author(s) References Examples

Description

Gives the frequency of breakpoints

Usage

1
getbp(.Object)

Arguments

.Object

object of class CGHresults

Value

bplist

list of dataframes containing 0/1 for the position of the breaks

Author(s)

F. Picard, E. Lebarbier, M. Hoebeke, G. Rigaill, B. Thiam, S. Robin

References

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

Examples

1
2
3
4
5
6
#set.seed(1)
#simul          = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
#CGHd           = new("CGHdata",Y=simul$Y)
#CGHo           = new("CGHoptions")
#CGHr           = multiseg(CGHd,CGHo)
#bplist         = getbp(CGHr)


cghseg documentation built on May 20, 2017, 4:40 a.m.
Search within the cghseg package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.