getbp: Breakpoints frequencies

In cghseg: Segmentation Methods for Array CGH Analysis

Description

Gives the frequency of breakpoints

Usage

getbp(.Object)

Arguments

.Object

object of class CGHresults

Value

bplist

list of dataframes containing 0/1 for the position of the breaks

Author(s)

F. Picard, E. Lebarbier, M. Hoebeke, G. Rigaill, B. Thiam, S. Robin

References

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

Examples

#set.seed(1)
#simul          = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
#CGHd           = new("CGHdata",Y=simul$Y)
#CGHo           = new("CGHoptions")
#CGHr           = multiseg(CGHd,CGHo)
#bplist         = getbp(CGHr)

Example output

Loading required package: parallel

cghseg documentation built on May 30, 2017, 6:56 a.m.