uniseg: Segmentation of univariate CGH profiles
In cghseg: Segmentation Methods for Array CGH Analysis

Description Usage Arguments Value Author(s) References Examples

Segmentation of univariate CGH profiles

1	uniseg(.Object,CGHo,uniKmax=NULL)

`.Object`	an object of the CGHdata class
`CGHo`	an object of the CGHoption class
`uniKmax`	list containing the maximum number of segments per profile. If !is.null(uniKmax) in the entry of the method, the method checks its validity.

CGHr

object of class CGHresult

F. Picard, E. Lebarbier, M. Hoebeke, G. Rigaill, B. Thiam, S. Robin

Joint segmentation, calling and normalization of multiple CGH profiles, Picard et al. Biostatistics (2011), Pruned dynamic programming for optimal multiple change-point detection, G. Rigaill, arXiv preprint arXiv:1004.0887 (2010)

#set.seed(1)
#simul = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
#CGHd  = new("CGHdata",Y=simul$Y)
#CGHo  = new("CGHoptions")
#CGHr  = uniseg(CGHd,CGHo)

cghseg documentation built on May 30, 2017, 6:56 a.m.