alpha: Replace slot alpha

In cghseg: Segmentation Methods for Array CGH Analysis

Description

changes slot alpha of a CGHoptions object

Arguments

.Object

an object of the CGHoptions class

Details

CGHo["alpha"] sets the proportion of length of each profile that will be used for . If ni is the length of profile i then

\code{uniKmax[[i]]} = α n_i

The speed of execution of the method decreases with Kmax. Each Kmax must fulfill some conditions wrt CGHo:

\code{uniKmax[[i]]} > \code{nblevels}

\code{uniKmax[[i]]}< n_i

Author(s)

F. Picard, E. Lebarbier, M. Hoebeke, G. Rigaill, B. Thiam, S. Robin

References

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

See Also

beta, getuniKmax

Examples

set.seed(1)
simul       = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
CGHd        = new("CGHdata",Y=simul$Y)
CGHo        = new("CGHoptions")
alpha(CGHo) = 0.5

cghseg documentation built on May 30, 2017, 6:56 a.m.