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chicane: Capture Hi-C Analysis Engine
Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.
Getting started
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Package details |
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| Author | Erle Holgersen [aut], Olivia Leavy [aut], Olivia Fletcher [aut], Frank Dudbridge [aut], Syed Haider [aut, cre] |
| Maintainer | Syed Haider <Syed.Haider@icr.ac.uk> |
| License | GPL-2 |
| Version | 0.1.8 |
| Package repository | View on CRAN |
| Installation |
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