get.distance: get.distance

In chicane: Capture Hi-C Analysis Engine

Description

Calculate distance between bait and target region

Usage

get.distance(interaction.data)

Arguments

interaction.data

data.table with interaction data. Must contain columns bait.chr, bait.start, bait.end, target.chr, target.start, target.end

Value

vector of absolute distances (NA for trans-interactions)

Examples

	data(bre80);
input.cols <- c('bait.chr', 'bait.start', 'bait.end', 
		'target.chr', 'target.start', 'target.end');
	get.distance( bre80[, input.cols, with = FALSE]);

chicane documentation built on Nov. 7, 2021, 1:07 a.m.