fill.in.zeros: fill.in.zeros
In chicane: Capture Hi-C Analysis Engine

Description Usage Arguments Value Examples

Add zero counts to interaction data

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fill.in.zeros(interaction.data, baits, fragments)

fill.in.zeroes(interaction.data, baits, fragments)

`interaction.data`	Data table containing interaction data
`baits`	Vector of bait IDs used in the experiment, in format chrN:start-end
`fragments`	Vector of potential fragments the baits can link up to, in format chrN:start-end

Data table containing origiina

data(bre80);
	bait.file <- system.file('extdata', '2q35.bed', package = 'chicane');
	fragment.file <- system.file('extdata', 'GRCh38_HindIII_chr2.bed.gz', package = 'chicane');
	results <- fill.in.zeros(
	bre80,
	baits = read.bed(bait.file), 
	fragments = read.bed(fragment.file)
	);