convert.hicup.digest.bed: convert.hicup.digest.bed

In chicane: Capture Hi-C Analysis Engine

Description

Convert a HiCUP digest file to BED format.

Usage

convert.hicup.digest.bed(hicup.digest, file.name = "")

Arguments

hicup.digest	Path to HiCUP digest
file.name	Path to output file. A blank string indicates output to the console.

Examples

hicup.digest <- system.file('extdata', 'HiCUP_digest_example.txt', package = 'chicane');
	convert.hicup.digest.bed(hicup.digest);

chicane documentation built on Nov. 7, 2021, 1:07 a.m.