Description Usage Arguments Author(s) See Also
Convert a BAM file to a format that can be used for replicate merging.
Note: This function does not process data enough to be used for interaction calling. Use prepare.data
for full preprocessing.
1 | convert.bam(bam, baits, fragments, temp.directory = NULL, keep.files = FALSE)
|
bam |
Path to a BAM file |
baits |
Path to a BED file containing the baits |
fragments |
Path to a BED file containing all restriction fragments in the genome |
temp.directory |
Directory where temporary files should be stored. Defaults to current directory. |
keep.files |
Logical indicating whether to keep temporary files |
Erle Holgersen <Erle.Holgersen@icr.ac.uk>
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