multiple.testing.correct: multiple.testing.correct

In chicane: Capture Hi-C Analysis Engine

Description

Perform multiple testing correction on p-values from interaction test. By default, multiple testing correction is applied per bait. To change this to a global multiple testing correction, set bait.level = FALSE.

Usage

multiple.testing.correct(interaction.data, bait.level = TRUE)

Arguments

interaction.data	Data table of interaction calls. Must contain columns p.value and bait.id.
bait.level	Logical indicating whether multiple testing correction should be performed per bait.

Value

Original data table with new column

q.value

FDR-corrected p-value

Examples

## Not run: 
	data(bre80);
 results <- fit.model(bre80);	
 adjusted.results <- multiple.testing.correct(results);

## End(Not run)

chicane documentation built on Nov. 7, 2021, 1:07 a.m.