get.combination.count: get.combination.count
In chicane: Capture Hi-C Analysis Engine
Description
Usage
Arguments
Value
View source: R/get.combination.count.R
Description
Calculate the number of possible combinations between baits and fragments,
excluding self-ligations and only counting bait-to-bait interactions once (e.g. a-b, not b-a)
Usage
1
get.combination.count(baits, fragments, cis.only = FALSE)
Arguments
baits
vector of bait IDs in form chrN:start-end
fragments
vector of fragment IDs in form chrN:start-end
cis.only
logical indicating whether cis-interactions only should be considered
Value
total number of possible combinations
chicane documentation built on Nov. 7, 2021, 1:07 a.m.
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Description Usage Arguments Value
View source: R/get.combination.count.R
Description
Calculate the number of possible combinations between baits and fragments, excluding self-ligations and only counting bait-to-bait interactions once (e.g. a-b, not b-a)
Usage
1 | get.combination.count(baits, fragments, cis.only = FALSE)
|
Arguments
baits |
vector of bait IDs in form chrN:start-end |
fragments |
vector of fragment IDs in form chrN:start-end |
cis.only |
logical indicating whether cis-interactions only should be considered |
Value
total number of possible combinations
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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