get.trans.counts: get.trans.counts

In chicane: Capture Hi-C Analysis Engine

Description

Calculate the number of trans-interactions per fragment, accounting for the fact that baits can be listed either as bait or target.

Usage

get.trans.counts(interaction.data)

Arguments

interaction.data

Data table containing interactions

Value

Data table with columns fragment.id and trans.count.

fragment.id	ID of restriction fragment in chrN:start-end format
trans.count	Number of trans interactions involving the fragment

Examples

	data(bre80);
	get.trans.counts(bre80[, .(bait.chr, target.chr, bait.id, target.id, count)]);

chicane documentation built on Nov. 7, 2021, 1:07 a.m.