API for chicane
Capture Hi-C Analysis Engine
| Global functions | |
|---|---|
| add.covariates | Man page Source code |
| add.fragment.coordinates | Man page Source code |
| bedtools.installed | Man page Source code |
| bre80 | Man page |
| check.model.numerical.fit | Man page Source code |
| check.split.data.numerical.fit | Man page Source code |
| chicane | Man page Source code |
| combine.replicates | Man page Source code |
| compare.replicates | Man page Source code |
| convert.bam | Man page Source code |
| convert.hicup.digest.bed | Man page Source code |
| convert.standard.format | Man page Source code |
| convert.to.one.based | Man page Source code |
| create.locus.plot | Man page Source code |
| create.modelfit.plot | Man page Source code |
| distance.bin | Man page Source code |
| distance.split | Man page Source code |
| fill.in.zeroes | Man page |
| fill.in.zeros | Man page Source code |
| filter.fragments | Man page Source code |
| fit.glm | Man page Source code |
| fit.model | Man page Source code |
| get.combination.count | Man page Source code |
| get.components | Man page Source code |
| get.distance | Man page Source code |
| get.id.components | Man page Source code |
| get.interaction.id | Man page Source code |
| get.trans.counts | Man page Source code |
| is.glm.nb.maxiter.warning | Man page Source code |
| is.glm.nb.theta.error | Man page Source code |
| is.glm.nb.theta.warning | Man page Source code |
| model.rows.sanity.check | Man page Source code |
| model.try.catch | Man page Source code |
| multiple.testing.correct | Man page Source code |
| prepare.data | Man page Source code |
| read.bed | Man page Source code |
| run.model.fitting | Man page Source code |
| smart.split | Man page Source code |
| stratified.enrichment.sample | Man page Source code |
| test.enrichment | Man page Source code |
| verify.interaction.data | Man page Source code |
