API for escalation
A Modular Approach to Dose-Finding Clinical Trials

Global functions
.dose_selector_print Source code
.dose_selector_summary Source code
.dose_selector_to_tibble Source code
CorrelatedPatientSample Man page
PatientSample Man page
as_tibble.boin_mtd_dose_selector Source code
as_tibble.cibp_dose_selector Source code
as_tibble.derived_dose_selector Source code
as_tibble.dont_skip_selector Source code
as_tibble.dose_paths Man page Source code
as_tibble.eff_tox_selector Source code
as_tibble.mtpi2_mtd_dose_selector Source code
as_tibble.mtpi_mtd_dose_selector Source code
as_tibble.selector Man page Source code
as_tibble.simulations Source code
as_tibble.simulations_collection Man page Source code
as_tibble.stop_when_too_toxic_selector Source code
as_tibble.tpi_mtd_dose_selector Source code
as_tibble.try_rescue_dose_selector Source code
boin12_admissible Source code
boin12_next_dose Source code
boin12_obd_dose_selector Source code
boin12_pbenchmark Source code
boin12_selector Source code
boin_mtd_dose_selector Source code
boin_selector Source code
calculate_probabilities Man page Source code
calculate_probabilities.phase1_2_dose_paths Source code
calculate_probabilities.phase1_dose_paths Source code
check_dose_selector_consistency Man page Source code
cibp_dose_selector Source code
cohort Man page Source code
cohort.boin12_selector Source code
cohort.boin_selector Source code
cohort.derived_dose_selector Source code
cohort.dfcrm_selector Source code
cohort.follow_path_selector Source code
cohort.mtpi2_selector Source code
cohort.mtpi_selector Source code
cohort.random_selector Source code
cohort.three_plus_three_selector Source code
cohort.tpi_selector Source code
cohort.trialr_crm_selector Source code
cohort.trialr_efftox_selector Source code
cohort.trialr_nbg_selector Source code
cohort.wages_tait_selector Source code
cohorts_of_n Man page
continue Man page Source code
continue.boin12_selector Source code
continue.boin_selector Source code
continue.crystallised_dose_paths Source code
continue.demand_n_at_dose_selector Source code
continue.derived_dose_selector Source code
continue.dfcrm_selector Source code
continue.dont_skip_selector Source code
continue.follow_path_selector Source code
continue.mtpi2_selector Source code
continue.mtpi_selector Source code
continue.random_selector Source code
continue.stop_at_n_selector Source code
continue.stop_when_n_at_dose_selector Source code
continue.stop_when_too_toxic_selector Source code
continue.stop_when_tox_ci_covered_selector Source code
continue.three_plus_three_selector Source code
continue.tpi_selector Source code
continue.trialr_crm_selector Source code
continue.trialr_efftox_selector Source code
continue.trialr_nbg_selector Source code
continue.try_rescue_dose_selector Source code
continue.wages_tait_selector Source code
convergence_plot Man page Source code
crystallised_dose_paths Man page Source code
demand_n_at_dose Man page Source code
demand_n_at_dose_selector Source code
dfcrm_selector Source code
dont_skip_doses Man page Source code
dont_skip_selector Source code
dose_admissible Man page Source code
dose_admissible.boin12_selector Source code
dose_admissible.boin_selector Source code
dose_admissible.derived_dose_selector Source code
dose_admissible.mtpi2_mtd_dose_selector Source code
dose_admissible.mtpi2_selector Source code
dose_admissible.mtpi_mtd_dose_selector Source code
dose_admissible.mtpi_selector Source code
dose_admissible.selector Source code
dose_admissible.stop_when_too_toxic_selector Source code
dose_admissible.three_plus_three_selector Source code
dose_admissible.tpi_mtd_dose_selector Source code
dose_admissible.tpi_selector Source code
dose_admissible.trialr_efftox_selector Source code
dose_admissible.try_rescue_dose_selector Source code
dose_admissible.wages_tait_selector Source code
dose_finding_path_node Source code
dose_indices Man page Source code
dose_indices.crystallised_dose_paths Source code
dose_indices.dose_paths Source code
dose_indices.selector Source code
dose_indices.simulations Source code
dose_paths Man page Source code
dose_paths_function Man page Source code
dose_paths_function.derived_dose_selector_factory Source code
dose_paths_function.eff_tox_selector_factory Source code
dose_paths_function.random_selector_factory Source code
dose_paths_function.tox_selector_factory Source code
doses_given Man page Source code
doses_given.boin12_selector Source code
doses_given.boin_selector Source code
doses_given.derived_dose_selector Source code
doses_given.dfcrm_selector Source code
doses_given.follow_path_selector Source code
doses_given.mtpi2_selector Source code
doses_given.mtpi_selector Source code
doses_given.random_selector Source code
doses_given.three_plus_three_selector Source code
doses_given.tpi_selector Source code
doses_given.trialr_crm_selector Source code
doses_given.trialr_efftox_selector Source code
doses_given.trialr_nbg_selector Source code
doses_given.wages_tait_selector Source code
eff Man page Source code
eff.boin12_selector Source code
eff.derived_dose_selector Source code
eff.random_selector Source code
eff.selector Source code
eff.trialr_efftox_selector Source code
eff.wages_tait_selector Source code
eff_at_dose Man page Source code
eff_at_dose.boin12_selector Source code
eff_at_dose.crystallised_dose_paths Source code
eff_at_dose.derived_dose_selector Source code
eff_at_dose.eff_tox_selector Source code
eff_at_dose.random_selector Source code
eff_at_dose.selector Source code
eff_at_dose.simulations Source code
eff_limit Man page Source code
eff_limit.boin12_selector Source code
eff_limit.derived_dose_selector Source code
eff_limit.eff_tox_selector Source code
eff_limit.trialr_efftox_selector Source code
eff_limit.wages_tait_selector Source code
empiric_eff_rate Man page Source code
empiric_eff_rate.derived_dose_selector Source code
empiric_eff_rate.eff_tox_selector Source code
empiric_eff_rate.selector Source code
empiric_tox_rate Man page Source code
empiric_tox_rate.derived_dose_selector Source code
empiric_tox_rate.selector Source code
enforce_three_plus_three Man page Source code
escalation Man page
escalation-package Man page
expit Source code
fit Man page Source code
fit.boin12_obd_dose_selector_factory Source code
fit.boin12_selector_factory Source code
fit.boin_mtd_dose_selector_factory Source code
fit.boin_selector_factory Source code
fit.cibp_dose_selector_factory Source code
fit.demand_n_at_dose_selector_factory Source code
fit.dfcrm_selector_factory Source code
fit.dont_skip_selector_factory Source code
fit.follow_path_selector_factory Source code
fit.mtpi2_mtd_dose_selector_factory Source code
fit.mtpi2_selector_factory Source code
fit.mtpi_mtd_dose_selector_factory Source code
fit.mtpi_selector_factory Source code
fit.random_selector_factory Source code
fit.stop_at_n_selector_factory Source code
fit.stop_when_n_at_dose_selector_factory Source code
fit.stop_when_too_toxic_selector_factory Source code
fit.stop_when_tox_ci_covered_selector_factory Source code
fit.three_plus_three_selector_factory Source code
fit.tpi_mtd_dose_selector_factory Source code
fit.tpi_selector_factory Source code
fit.trialr_crm_selector_factory Source code
fit.trialr_efftox_selector_factory Source code
fit.trialr_nbg_selector_factory Source code
fit.try_rescue_dose_selector_factory Source code
fit.wages_tait_selector_factory Source code
follow_path Man page Source code
follow_path_selector Source code
get_boin Man page Source code
get_boin12 Man page Source code
get_dfcrm Man page Source code
get_dfcrm_tite Man page Source code
get_dose_paths Man page Source code
get_empiric_crm_skeleton_weights Man page Source code
get_mtpi Man page Source code
get_mtpi2 Man page Source code
get_posterior_prob_tox_sample Source code
get_potential_outcomes Man page Source code
get_random_selector Man page Source code
get_three_plus_three Man page Source code
get_tpi Man page Source code
get_trialr_crm Man page Source code
get_trialr_crm_tite Man page Source code
get_trialr_efftox Man page Source code
get_trialr_nbg Man page Source code
get_trialr_nbg_tite Man page Source code
get_wages_and_tait Man page Source code
graph_paths Man page Source code
is_randomising Man page Source code
is_randomising.derived_dose_selector Source code
is_randomising.random_selector Source code
is_randomising.selector Source code
is_randomising.wages_tait_selector Source code
length.simulations Source code
linear_follow_up_weight Man page Source code
mean_prob_eff Man page Source code
mean_prob_eff.boin12_selector Source code
mean_prob_eff.derived_dose_selector Source code
mean_prob_eff.random_selector Source code
mean_prob_eff.selector Source code
mean_prob_eff.trialr_efftox_selector Source code
mean_prob_eff.wages_tait_selector Source code
mean_prob_tox Man page Source code
mean_prob_tox.boin12_selector Source code
mean_prob_tox.boin_selector Source code
mean_prob_tox.derived_dose_selector Source code
mean_prob_tox.dfcrm_selector Source code
mean_prob_tox.follow_path_selector Source code
mean_prob_tox.mtpi2_mtd_dose_selector Source code
mean_prob_tox.mtpi2_selector Source code
mean_prob_tox.mtpi_mtd_dose_selector Source code
mean_prob_tox.mtpi_selector Source code
mean_prob_tox.random_selector Source code
mean_prob_tox.three_plus_three_selector Source code
mean_prob_tox.tpi_mtd_dose_selector Source code
mean_prob_tox.tpi_selector Source code
mean_prob_tox.trialr_crm_selector Source code
mean_prob_tox.trialr_efftox_selector Source code
mean_prob_tox.trialr_nbg_selector Source code
mean_prob_tox.wages_tait_selector Source code
median_prob_eff Man page Source code
median_prob_eff.boin12_selector Source code
median_prob_eff.derived_dose_selector Source code
median_prob_eff.random_selector Source code
median_prob_eff.selector Source code
median_prob_eff.trialr_efftox_selector Source code
median_prob_eff.wages_tait_selector Source code
median_prob_tox Man page Source code
median_prob_tox.boin12_selector Source code
median_prob_tox.boin_selector Source code
median_prob_tox.derived_dose_selector Source code
median_prob_tox.dfcrm_selector Source code
median_prob_tox.follow_path_selector Source code
median_prob_tox.mtpi2_selector Source code
median_prob_tox.mtpi_selector Source code
median_prob_tox.random_selector Source code
median_prob_tox.three_plus_three_selector Source code
median_prob_tox.tpi_selector Source code
median_prob_tox.trialr_crm_selector Source code
median_prob_tox.trialr_efftox_selector Source code
median_prob_tox.trialr_nbg_selector Source code
median_prob_tox.wages_tait_selector Source code
model_frame Man page Source code
model_frame.derived_dose_selector Source code
model_frame.eff_tox_selector Source code
model_frame.selector Source code
model_frame_to_counts Source code
mtpi2_mtd_dose_selector Source code
mtpi2_selector Source code
mtpi_mtd_dose_selector Source code
mtpi_selector Source code
n_at_dose Man page Source code
n_at_dose.crystallised_dose_paths Source code
n_at_dose.derived_dose_selector Source code
n_at_dose.selector Source code
n_at_dose.simulations Source code
n_at_recommended_dose Man page Source code
n_at_recommended_dose.crystallised_dose_paths Source code
n_at_recommended_dose.selector Source code
n_at_recommended_dose.simulations Source code
num_cohort_outcomes Man page Source code
num_dose_path_nodes Man page Source code
num_doses Man page Source code
num_doses.boin12_selector Source code
num_doses.boin_selector Source code
num_doses.crystallised_dose_paths Source code
num_doses.derived_dose_selector Source code
num_doses.dfcrm_selector Source code
num_doses.dose_paths Source code
num_doses.follow_path_selector Source code
num_doses.mtpi2_selector Source code
num_doses.mtpi_selector Source code
num_doses.random_selector Source code
num_doses.simulations Source code
num_doses.three_plus_three_selector Source code
num_doses.tpi_selector Source code
num_doses.trialr_crm_selector Source code
num_doses.trialr_efftox_selector Source code
num_doses.trialr_nbg_selector Source code
num_doses.wages_tait_selector Source code
num_eff Man page Source code
num_eff.crystallised_dose_paths Source code
num_eff.eff_tox_selector Source code
num_eff.selector Source code
num_eff.simulations Source code
num_patients Man page Source code
num_patients.boin12_selector Source code
num_patients.boin_selector Source code
num_patients.crystallised_dose_paths Source code
num_patients.derived_dose_selector Source code
num_patients.dfcrm_selector Source code
num_patients.follow_path_selector Source code
num_patients.mtpi2_selector Source code
num_patients.mtpi_selector Source code
num_patients.random_selector Source code
num_patients.simulations Source code
num_patients.three_plus_three_selector Source code
num_patients.tpi_selector Source code
num_patients.trialr_crm_selector Source code
num_patients.trialr_efftox_selector Source code
num_patients.trialr_nbg_selector Source code
num_patients.wages_tait_selector Source code
num_tox Man page Source code
num_tox.crystallised_dose_paths Source code
num_tox.selector Source code
num_tox.simulations Source code
parse_phase1_2_outcomes Man page Source code
parse_phase1_outcomes Man page Source code
pava Source code
pava_bb_prob_tox_exceeds Source code
phase1_2_dose_paths Source code
phase1_2_outcomes_to_cohorts Man page Source code
phase1_2_sim Source code
phase1_dose_paths Source code
phase1_outcomes_to_cohorts Man page Source code
phase1_sim Source code
phase1_tite_sim Source code
print.boin_mtd_dose_selector Source code
print.cibp_dose_selector Source code
print.crystallised_dose_paths Source code
print.dont_skip_selector Source code
print.dose_paths Source code
print.eff_tox_selector Source code
print.mtpi2_mtd_dose_selector Source code
print.mtpi_mtd_dose_selector Source code
print.selector Source code
print.simulations Source code
print.stop_when_too_toxic_selector Source code Source code
print.tpi_mtd_dose_selector Source code
print.try_rescue_dose_selector Source code
prob_administer Man page Source code
prob_administer.crystallised_dose_paths Source code
prob_administer.random_selector Source code
prob_administer.selector Source code
prob_administer.simulations Source code
prob_administer.wages_tait_selector Source code
prob_eff_exceeds Man page Source code
prob_eff_exceeds.boin12_selector Source code
prob_eff_exceeds.derived_dose_selector Source code
prob_eff_exceeds.random_selector Source code
prob_eff_exceeds.selector Source code
prob_eff_exceeds.trialr_efftox_selector Source code
prob_eff_exceeds.wages_tait_selector Source code
prob_eff_quantile Man page Source code
prob_eff_quantile.boin12_selector Source code
prob_eff_quantile.derived_dose_selector Source code
prob_eff_quantile.random_selector Source code
prob_eff_quantile.selector Source code
prob_eff_quantile.trialr_efftox_selector Source code
prob_eff_quantile.wages_tait_selector Source code
prob_eff_samples Man page Source code
prob_eff_samples.boin12_selector Source code
prob_eff_samples.derived_dose_selector Source code
prob_eff_samples.selector Source code
prob_eff_samples.wages_tait_selector Source code
prob_recommend Man page Source code
prob_recommend.crystallised_dose_paths Source code
prob_recommend.simulations Source code
prob_tox_exceeds Man page Source code
prob_tox_exceeds.boin12_selector Source code
prob_tox_exceeds.boin_selector Source code
prob_tox_exceeds.derived_dose_selector Source code
prob_tox_exceeds.dfcrm_selector Source code
prob_tox_exceeds.follow_path_selector Source code
prob_tox_exceeds.mtpi2_mtd_dose_selector Source code
prob_tox_exceeds.mtpi2_selector Source code
prob_tox_exceeds.mtpi_mtd_dose_selector Source code
prob_tox_exceeds.mtpi_selector Source code
prob_tox_exceeds.random_selector Source code
prob_tox_exceeds.three_plus_three_selector Source code
prob_tox_exceeds.tpi_mtd_dose_selector Source code
prob_tox_exceeds.tpi_selector Source code
prob_tox_exceeds.trialr_crm_selector Source code
prob_tox_exceeds.trialr_efftox_selector Source code
prob_tox_exceeds.trialr_nbg_selector Source code
prob_tox_exceeds.wages_tait_selector Source code
prob_tox_quantile Man page Source code
prob_tox_quantile.boin12_selector Source code
prob_tox_quantile.boin_selector Source code
prob_tox_quantile.derived_dose_selector Source code
prob_tox_quantile.dfcrm_selector Source code
prob_tox_quantile.follow_path_selector Source code
prob_tox_quantile.mtpi2_selector Source code
prob_tox_quantile.mtpi_selector Source code
prob_tox_quantile.random_selector Source code
prob_tox_quantile.three_plus_three_selector Source code
prob_tox_quantile.tpi_selector Source code
prob_tox_quantile.trialr_crm_selector Source code
prob_tox_quantile.trialr_efftox_selector Source code
prob_tox_quantile.trialr_nbg_selector Source code
prob_tox_quantile.wages_tait_selector Source code
prob_tox_samples Man page Source code
prob_tox_samples.boin12_selector Source code
prob_tox_samples.boin_selector Source code
prob_tox_samples.derived_dose_selector Source code
prob_tox_samples.dfcrm_selector Source code
prob_tox_samples.follow_path_selector Source code
prob_tox_samples.mtpi2_selector Source code
prob_tox_samples.mtpi_selector Source code
prob_tox_samples.random_selector Source code
prob_tox_samples.selector Source code
prob_tox_samples.three_plus_three_selector Source code
prob_tox_samples.tpi_selector Source code
prob_tox_samples.trialr_crm_selector Source code
prob_tox_samples.trialr_efftox_selector Source code
prob_tox_samples.trialr_nbg_selector Source code
prob_tox_samples.wages_tait_selector Source code
random_selector Source code
recommended_dose Man page Source code
recommended_dose.boin12_obd_dose_selector Source code
recommended_dose.boin12_selector Source code
recommended_dose.boin_mtd_dose_selector Source code
recommended_dose.boin_selector Source code
recommended_dose.cibp_dose_selector Source code
recommended_dose.derived_dose_selector Source code
recommended_dose.dfcrm_selector Source code
recommended_dose.dont_skip_selector Source code
recommended_dose.follow_path_selector Source code
recommended_dose.mtpi2_mtd_dose_selector Source code
recommended_dose.mtpi2_selector Source code
recommended_dose.mtpi_mtd_dose_selector Source code
recommended_dose.mtpi_selector Source code
recommended_dose.random_selector Source code
recommended_dose.simulations Source code
recommended_dose.stop_when_too_toxic_selector Source code
recommended_dose.three_plus_three_selector Source code
recommended_dose.tpi_mtd_dose_selector Source code
recommended_dose.tpi_selector Source code
recommended_dose.trialr_crm_selector Source code
recommended_dose.trialr_efftox_selector Source code
recommended_dose.trialr_nbg_selector Source code
recommended_dose.try_rescue_dose_selector Source code
recommended_dose.wages_tait_selector Source code
reverse_engineer_prob_tox_quantile Source code
select_boin12_obd Man page Source code
select_boin_mtd Man page Source code
select_dose_by_cibp Man page Source code
select_mtpi2_mtd Man page Source code
select_mtpi_mtd Man page Source code
select_tpi_mtd Man page Source code
selector Man page Source code
selector_factory Man page Source code
simulate_compare Man page Source code
simulate_trials Man page Source code
simulation_function Man page Source code
simulation_function.derived_dose_selector_factory Source code
simulation_function.dfcrm_selector_factory Source code
simulation_function.eff_tox_selector_factory Source code
simulation_function.random_selector_factory Source code
simulation_function.tox_selector_factory Source code
simulation_function.trialr_crm_selector_factory Source code
simulation_function.trialr_nbg_selector_factory Source code
simulations Man page Source code
simulations_collection Man page Source code
spread_paths Man page Source code
spruce_outcomes_df Source code
stack_sims_vert Man page Source code
stop_at_n Man page Source code
stop_at_n_selector Source code
stop_when_n_at_dose Man page Source code
stop_when_n_at_dose_selector Source code
stop_when_too_toxic Man page Source code
stop_when_too_toxic_selector Source code
stop_when_tox_ci_covered Man page Source code
stop_when_tox_ci_covered_selector Source code
stopping_for_toxicity Source code
summary.boin_mtd_dose_selector Source code
summary.cibp_dose_selector Source code
summary.crystallised_dose_paths Source code
summary.derived_dose_selector Source code
summary.dfcrm_selector Source code
summary.dont_skip_selector Source code
summary.eff_tox_selector Source code
summary.mtpi2_mtd_dose_selector Source code
summary.mtpi_mtd_dose_selector Source code
summary.selector Source code
summary.simulations Source code
summary.simulations_collection Source code
summary.stop_when_too_toxic_selector Source code
summary.three_plus_three_selector Source code
summary.tpi_mtd_dose_selector Source code
summary.try_rescue_dose_selector Source code
supports_sampling Man page Source code
supports_sampling.boin12_selector Source code
supports_sampling.boin_selector Source code
supports_sampling.derived_dose_selector Source code
supports_sampling.dfcrm_selector Source code
supports_sampling.follow_path_selector Source code
supports_sampling.mtpi2_selector Source code
supports_sampling.mtpi_selector Source code
supports_sampling.random_selector Source code
supports_sampling.three_plus_three_selector Source code
supports_sampling.tpi_selector Source code
supports_sampling.trialr_crm_selector Source code
supports_sampling.trialr_efftox_selector Source code
supports_sampling.trialr_nbg_selector Source code
supports_sampling.wages_tait_selector Source code
three_plus_three Man page Source code
three_plus_three_selector Source code
tox Man page Source code
tox.boin12_selector Source code
tox.boin_selector Source code
tox.derived_dose_selector Source code
tox.dfcrm_selector Source code
tox.follow_path_selector Source code
tox.mtpi2_selector Source code
tox.mtpi_selector Source code
tox.random_selector Source code
tox.three_plus_three_selector Source code
tox.tpi_selector Source code
tox.trialr_crm_selector Source code
tox.trialr_efftox_selector Source code
tox.trialr_nbg_selector Source code
tox.wages_tait_selector Source code
tox_at_dose Man page Source code
tox_at_dose.boin12_selector Source code
tox_at_dose.boin_selector Source code
tox_at_dose.crystallised_dose_paths Source code
tox_at_dose.derived_dose_selector Source code
tox_at_dose.follow_path_selector Source code
tox_at_dose.mtpi2_selector Source code
tox_at_dose.mtpi_selector Source code
tox_at_dose.random_selector Source code
tox_at_dose.selector Source code
tox_at_dose.simulations Source code
tox_at_dose.three_plus_three_selector Source code
tox_at_dose.tpi_selector Source code
tox_at_dose.trialr_crm_selector Source code
tox_at_dose.trialr_efftox_selector Source code
tox_at_dose.trialr_nbg_selector Source code
tox_limit Man page Source code
tox_limit.boin12_selector Source code
tox_limit.derived_dose_selector Source code
tox_limit.eff_tox_selector Source code
tox_limit.trialr_efftox_selector Source code
tox_limit.wages_tait_selector Source code
tox_target Man page Source code
tox_target.boin_selector Source code
tox_target.derived_dose_selector Source code
tox_target.dfcrm_selector Source code
tox_target.eff_tox_selector Source code
tox_target.mtpi2_selector Source code
tox_target.mtpi_selector Source code
tox_target.selector Source code
tox_target.tpi_selector Source code
tox_target.trialr_crm_selector Source code
tox_target.trialr_nbg_selector Source code
tpi_mtd_dose_selector Source code
tpi_selector Source code
trial_duration Man page Source code
trial_duration.simulations Source code
trialr_crm_selector Source code
trialr_efftox_selector Source code
trialr_nbg_selector Source code
try_rescue_dose Man page Source code
try_rescue_dose_selector Source code
utility Man page Source code
utility.boin12_selector Source code
utility.derived_dose_selector Source code
utility.selector Source code
wages_tait_selector Source code
weight Man page Source code
weight.derived_dose_selector Source code
weight.dfcrm_selector Source code
weight.selector Source code
weight.trialr_crm_selector Source code
weight.trialr_nbg_selector Source code
escalation documentation built on June 27, 2024, 5:09 p.m.