| bott | Example of sequencing data to test the rankReads function. |
| calcSRmat | Calculation of the sorted rank matrix from the dataset |
| calcSRmatMod | Calculation of the sorted rank matrix from the dataset |
| cghData | Example of aCGH "data file" for the fcros package. |
| cghInfo | Example of aCGH "info file" for the fcros package. |
| chrMerge | Using a C code for merging chromosome segments |
| chrPlot | Plot a chromosome data |
| chrPlot2 | Plot a chromosome segmentation results |
| chrSegment | Segmentation of a chromosome data |
| dataSummary | Summarization of the detection results for a list of... |
| fc2Calc | Calculation of fold change using pairwise comparison values |
| fcros | Search for differentially expressed genes/probes |
| fcros2 | Search for differentially expressed genes/probes |
| fcrosFCmat | Calculation of a matrix of fold changes using pairwise... |
| fcrosMod | Search for differentially expressed genes or to detect... |
| fcros-package | A Method to Search for Differentially Expressed Genes and to... |
| fcrosRead | Read a tab delimited text file |
| fcrosTopN | Search for the top N changed genes or probes |
| fcrosTtest | Student t-test for detecting differentially expressed genes |
| fcrosWrite | Writing the fcros() or pfco() results in a tab delimited text... |
| fdata | Example of dataset for the fcros package. |
| fvalTopN | Search for the top N changed genes or probes using f-values |
| fvalVolcanoPlot | Performs a volcano plot of the FCROS/PFCO statistics |
| histoPlot | Histogram plot function of the fcros package results |
| moyStdCalc | Calculation of the mean and the standard deviation of the... |
| pfco | Searching for differentially expressed genes/probes using an... |
| pfcoMod | Searching for differentially expressed genes or detecting... |
| pvalTopN | Search for the top N changed genes or probes using p-values |
| pvalVolcanoPlot | Performs a volcano plot of the FCROS/PFCO statistics |
| rankReads | This function computes a score to assess the significance of... |
| rmatCalc | Calculation of the FC matrix using pairwise comparisons |
| rmatTrim | Calculation of the reduced matrix containing sorted rank... |
| scoreThr | Determine numerically a threshold for the ranking score |
| tcnReads | Performs a total count normalization of reads |
| tprobaCalc | Calculation of the Student one sample test probabilities |
| varBeta | Compute variance of a beta distribution from data |
| voomReads | Transformation of read count values |
