rmatCalc: Calculation of the FC matrix using pairwise comparisons

In fcros: A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations

Description

This is an internal function for using a C code to calculate a vector form of the matrix of fold changes using pairwise comparison of data samples.

Usage

rmatCalc(fvect, n, m1, m2)

Arguments

fvect	Two biological conditions dataset matrix
n	Number of genes or probes in the dataset
m1	Number of samples in the first biological condition
m2	Number of samples in the second biological condition

Author(s)

Doulaye Dembele [e-mail]

References

Dembele D and Kaster P, Fold change rank ordering statistics: a new method for detecting differentially expressed genes, BMC bioinformatics, 2014, 15:14

Dembele D and Kastner P, Comment on: Fold change rank ordering statistics: a new method for detecting differentially expressed genes, BMC Bioinformatics, 2016, 17:462

Examples

#    data(fdata);

Example output

fcros documentation built on May 31, 2019, 5:03 p.m.