tcnReads: Performs a total count normalization of reads

In fcros: A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations

Description

Given a data table x with count reads, one column for each sample, this function adjust values in such a way they become comparable between samples. User can specify the maximum value for total count reads to be used for each sample.

Usage

tcnReads(x, maxVal=0)

Arguments

x	Data table with count reads, one column for one sample
maxVal	Target total number reads for each sample. The value 0 (default) means that the median total of samples is used: maxVal = 0

Value

This function returns a data table of the same size as input

x2	Data table of the same size as x

Author(s)

Doulaye Dembele [e-mail]

References

Dembele D, Analysis of high biological data using their rank values, Stat Methods Med Res, accepted for publication, 2018

Dembele D, manuscript under preparation

Examples

#    data(fdata);

Example output

fcros documentation built on May 31, 2019, 5:03 p.m.