fc2Calc: Calculation of fold change using pairwise comparison values

In fcros: A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations

Description

This is an internal function for using a C code to calculate fold changes using pairwise comparison of samples.

Usage

fc2Calc(rvect, n, m, idx, m2)

Arguments

rvect	Vector containing the full or reduced matrix with the pairwise comparison of samples results
n	Number of genes or probes in the dataset
m	Number of columns of the full or reduced matrix of pairwise comparison of samples results
idx	Indexes of the columns to keep in the pairwise comparison of samples
m2	Number of columns in the full or reduced matrix of comparison of samples

Author(s)

Doulaye Dembele [e-mail]

References

Dembele D, Analysis of high biological data using their rank values, Stat Methods Med Res, accepted for publication, 2018

Examples

#    data(fdata);

Example output

fcros documentation built on May 31, 2019, 5:03 p.m.