bott: Example of sequencing data to test the rankReads function.

In fcros: A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations

Description

This is a subset of data taken from the Bottomly dataset see http://bowtie-bio.sourceforge.net/recount/. The complete dataset has 36,536 rows or ENSEMBL identifiers (genes) and 21 columns (samples). For the "bott" data, the first 5,000 rows, first 3 and last 3 samples were used.

Usage

data(bott)

Format

A data frame with 5,000 rows and 7 columns.

gene:

ENSEMBL ID

SRX033480:

sequencing values for the first B6 mouse

SRX033488:

sequencing values for the second B6 mouse

SRX033481:

sequencing values for the third B6 mouse

SRX033493:

sequencing values for the first D2 mouse

SRX033486:

sequencing values for the second D2 mouse

SRX033494:

sequencing values for the third B6 mouse

Details

"bott" is a subset of a complet dataset obtained using a single RNA-seq reads from C57BL/6J (B6) and DBA/J2 (D2) mice.

References

Bottomly et al. Evaluating Gene Expression in C57BL/6J and DBA/J2 Mouse Striatum Using RNA-seq and Microarrays, PLoS One, 6(3)e17820, 2011

Examples

   data(bott)
   summary(bott)

fcros documentation built on May 31, 2019, 5:03 p.m.