fcrosRead: Read a tab delimited text file

In fcros: A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations

Description

This function can be used to read a tab delimited text file to be used as input for the functions fcros(), fcros2(), fcrosMod() pfco() or pfcoMod(). You may also use other functions (read.csv(), read.csv2(), read.delim() or read.delim2()) to read your dataset.

Usage

fcrosRead(filename)

Arguments

filename

"filename" is a tab delimited text file to read. The first line of this file should contain labels.

Value

Output is a matrix or a table containing data.

Author(s)

Doulaye Dembele, [e-mail]

Examples

  # generate random dataset of size 100 x 5
  xdata <- matrix(c(rep(0,600)), ncol = 6);

  xdata[,2:6] <- matrix(rnorm(500,0,1), ncol = 5);

  x0 <- matrix(NA, 100, 0);

  for (i in 1:100) {
      x0[i] <- paste("Obs_",i, sep = "");
  }

  # set column names
  colnames(xdata) <- c("Index", "Col_1", "Col_2", "Col_3", "Col_4", "Col_5");

  # save data in a text file
  write.table(xdata, file = "test2delete.txt", quote = FALSE, sep = "\t",
         eol = "\n", col.names = TRUE, row.names = FALSE);

  # now used fcros.read() to open the file
  mydata <- fcrosRead(file = "test2delete.txt");

  summary(mydata)

fcros documentation built on May 31, 2019, 5:03 p.m.