This dataset is part of the Agilent 244K design array probes description file which is used in the publicatin of Sircoulomb et al. 2010, BMC Cancer, 10:539. For our illustration, we used only 3 chromosomes (7, 8 and 9) data. The complete data are available in the file "GPL9158-3352.txt", see the Gene Expression Omnibus website and accession number GSE17907.
A data frame with 33,3613 rows for 7 columns with information on probes.
a numeric used for the probe
a text for the unique probe ID
a text with the gene symbol associated with the probe
a text with the chromosome index associated with the probe
a start position value for the sequence associated with the probe
an end position value for the sequence associated with the probe
a text for the cytoband associated with the probe
This is a part of information obtained from the Agilent 244K design array probes description file.
F Sircoulomb, I Bekhouche, P Finetti, J Adelaide, AB Hamida, J Bonansea, S Raynaud, C Innocenti, E Charafe-Jauffret, C Tarpin, FB Ayed, P Viens, J Jacquemier, F Bertucci, D Birnbaum and M Chaffanet; Genome profiling of ERBB2-amplifief breast cancers. BMC Cancer, 2010, 10:539
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