Nothing
opt13 <- eventReactive(input$RunOpt13, {
Gprint(MODE_DEBUG, "Opt13\n")
dem = input$Dememo13
nbatchs = input$Nbatches13
niters = input$Niters13
ficout = tempfile()
ficin = GenepopFile()$datapath
out = TRUE
if (is.null(ficin)) {
out = FALSE
} else {
Gprint(MODE_DEBUG, ficin)
setRandomSeed(getSeed(input$randomSeed))
show("spinner")
tryCatch(test_HW(ficin, which = "Proba", outputFile = ficout, enumeration = TRUE, dememorization = dem, batches = nbatchs,
iterations = niters), error = function(e) {
file.create(ficout)
write(paste("Exeption : ", e$message), file = ficout)
}, finally = hide("spinner"))
file.rename("cmdline.txt", "cmdline.old")
}
data.frame(file = ficout, output = out)
})
output$Opt13outLoc <- renderText({
opt <- opt13()
if (opt$output) {
filePath <- toString(opt$file)
if (file.size(filePath) > 300) {
fileText <- readLines(filePath)
nbli = grep("Results by locus", fileText)
nblig = grep("Results by population", fileText)
fileText <- paste(fileText[nbli:(nblig - 1)], collapse = "\n")
shinyjs::enable("downloadOpt13All")
} else {
fileText <- readLines(filePath)
}
} else {
fileText <- "No genepop file found! please upload a file"
}
fileText
})
output$Opt13outPop <- renderText({
opt <- opt13()
if (opt$output) {
filePath <- toString(opt$file)
if (file.size(filePath) > 300) {
fileText <- readLines(filePath)
nbli = grep("All locus, all populations", fileText)
nblig = grep("Results by population", fileText)
fileText <- paste(fileText[nblig:(nbli - 1)], collapse = "\n")
} else {
fileText <- readLines(filePath)
}
} else {
fileText <- "No genepop file found! please upload a file"
}
fileText
})
output$Opt13outLocPop <- renderText({
opt <- opt13()
if (opt$output) {
filePath <- toString(opt$file)
if (file.size(filePath) > 300) {
fileText <- readLines(filePath)
nbli = grep("All locus, all populations", fileText)
fileText <- paste(fileText[nbli:length(fileText)], collapse = "\n")
} else {
fileText <- readLines(filePath)
}
} else {
fileText <- "No genepop file found! please upload a file"
}
fileText
})
output$downloadOpt13Loc <- downloadHandler(filename = function() {
paste("result_opt13_Loc_", Sys.Date(), ".txt", sep = "")
}, content = function(con) {
opt <- opt13()
if (opt$output) {
filePath <- toString(opt$file)
fileText <- readLines(filePath)
nbli = grep("Results by locus", fileText)
nblig = grep("Results by population", fileText)
fileText <- paste(fileText[nbli:(nblig - 1)], collapse = "\n")
} else {
fileText <- "No genepop file found! please upload a file"
}
write(fileText, con)
})
output$downloadOpt13Pop <- downloadHandler(filename = function() {
paste("result_opt13_Pop_", Sys.Date(), ".txt", sep = "")
}, content = function(con) {
opt <- opt13()
if (opt$output) {
filePath <- toString(opt$file)
fileText <- readLines(filePath)
nbli = grep("All locus, all populations", fileText)
nblig = grep("Results by population", fileText)
fileText <- paste(fileText[nblig:(nbli - 1)], collapse = "\n")
} else {
fileText <- "No genepop file found! please upload a file"
}
write(fileText, con)
})
output$downloadOpt13All <- downloadHandler(filename = function() {
paste("result_opt13_", Sys.Date(), ".txt", sep = "")
}, content = function(con) {
opt <- opt13()
if (opt$output) {
filePath <- toString(opt$file)
fileText <- readLines(filePath)
} else {
fileText <- "No genepop file found! please upload a file"
}
write(fileText, con)
})
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