mat_pw_fst: Compute a pairwise FST matrix between populations
In graph4lg: Build Graphs for Landscape Genetics Analysis
mat_pw_fst R Documentation
Compute a pairwise FST matrix between populations
Description
The function computes the pairwise FST matrix between
populations from an object of class genind
Usage
mat_pw_fst(x)
Arguments
x
An object of class genind
Details
The formula used is that of Weir et Cockerham (1984).
This functions uses directly the function pairwise.WCfst
from hierfstat.
Value
A pairwise matrix of FST with as many rows and columns as
there are populations in the input data.
Warnings
Negative values are converted into 0
Author(s)
P. Savary
References
\insertRefweir1984estimatinggraph4lg
Examples
## Not run:
data("data_ex_genind")
mat_fst <- mat_pw_fst(data_ex_genind)
## End(Not run)
graph4lg documentation built on Feb. 16, 2023, 5:43 p.m.
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| mat_pw_fst | R Documentation |
Compute a pairwise FST matrix between populations
Description
The function computes the pairwise FST matrix between
populations from an object of class genind
Usage
mat_pw_fst(x)
Arguments
x |
An object of class |
Details
The formula used is that of Weir et Cockerham (1984).
This functions uses directly the function pairwise.WCfst
from hierfstat.
Value
A pairwise matrix of FST with as many rows and columns as
there are populations in the input data.
Warnings
Negative values are converted into 0
Author(s)
P. Savary
References
\insertRefweir1984estimatinggraph4lg
Examples
## Not run:
data("data_ex_genind")
mat_fst <- mat_pw_fst(data_ex_genind)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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