Man pages for hadron
Analysis Framework for Monte Carlo Simulation Data in Physics
| add.cf | Arithmetically adds two correlation functions |
| addConfIndex2cf | add a configuration index to an 'cf' object |
| add.raw_cf | add two 'raw_cf' objects |
| addStat.cf | Combine statistics of two cf objects |
| addStat.raw_cf | Extend statistics of an existing 'raw_cf' container |
| alphas | compute alpha strong at given scale |
| analysis_gradient_flow | analysis_gradient_flow |
| analysis_online | analysis_online |
| avg.cbt.cf | average close-by-times in a correlation function |
| block.raw_cf | Block average correlation function data |
| bootstrap.analysis | Performs a Bootstrap with Blocking Analysis of a Timeseries |
| bootstrap.cf | bootstrap a set of correlation functions |
| bootstrap.effectivemass | Computes effective masses with bootstrapping errors |
| bootstrap.gevp | perform a bootstrap analysis of a GEVP |
| bootstrap.hankel | GEVP method based on Hankel matrices. |
| bootstrap.hankel_summed | GEVP method based on Hankel matrices. |
| bootstrap.meanerror | Compute the bootstrap error of the mean |
| bootstrap.nlsfit | Bootstrap a non-linear least-squares fit |
| cA2.09.48_3pi_I3_0_A1u_1_pc | A three pion correlator with significant thermal states. |
| c.cf | Concatenate correlation function objects |
| cdh | finite size corrections a la Colangelo, Duerr, Haefeli |
| cdhnew | finite size corrections a la Colangelo, Duerr, Haefeli, but... |
| CExp | Cosh Or Sinh Build Out Of Two Exps |
| cf | Correlation function container |
| cf_boot | Bootstrapped CF mixin constructor |
| cf_key_meson_2pt | Generate key string to identify a meson 2pt function |
| cf_key_meson_3pt | Generate HDF5 key for CVC 'correlators' meson 3pt function... |
| cf_meta | CF metadata mixin constructor |
| cf_orig | Original data CF mixin constructor |
| cf_principal_correlator | Principal correlator CF mixin constructor |
| cf_shifted | Shifted CF mixin constructor |
| cf_smeared | Smeared CF mixin constructor |
| cf_subtracted | Subtracted CF mixin constructor |
| cf_weighted | Weighted CF mixin constructor |
| computeacf | Computes The ACF and Integrated AC Time |
| computeDisc | computes a disconnected correlation function from loops |
| computefps | Computes the pseudoscalar decay constant for the twisted mass... |
| computefpsOS | Computes the pseudoscalar decay constant for the Osterwalder... |
| compute.plotlims | compute.plotlims |
| concat.cf | Concatenate two correlation function objects |
| concat.raw_cf | Concatenate two 'raw_cf' correlation function objects |
| conj_raw_cf | Take the complex conjugate of a 'raw_cf' object |
| construct_onlinemeas_rundir | Construct a run directory string for analysis_online |
| correlatormatrix | Sample correlator matrix |
| correlators_key_meson_2pt | Generate HDF5 key for CVC 'correlators' meson 2pt function |
| correlators_key_meson_3pt | Generate HDF5 key for CVC 'correlators' meson 3pt function... |
| c.raw_cf | Concatenate 'raw_cf' correlation function objects |
| create_displ_chains | create list of chains of displacements Multilpe covariant... |
| cvc_local_loop_key | Generate HDF5 key for a momentum and spin-projected CVC loop |
| cvc_read_loops | read HDF5 loop files in the CVC loop format |
| cvc_to_raw_cf | Convert correlation function read from CVC HDF5 or AFF format... |
| cyprus_make_key_scalar | HDF5 key for Cyprus CalcLoops scalar-type loops |
| cyprus_make_key_vector | HDF5 key for Cyprus CalcLoops derivative-type loops |
| cyprus_read_loops | read HDF5 loop files in the Cyprus CalcLoops format |
| disc_3pt | disconnected contribution to current insertion three-point... |
| dispersion_relation | Continuum dispersion relation for CM to lattice frame |
| dot-cf | Arithmetically subtract correlators |
| dot-raw_cf | add two 'raw_cf' objects |
| effectivemass | effectivemass |
| effectivemass.cf | Computes effective mass values for a correlation function |
| effmass | effmass |
| effmass2 | effmass2 |
| escapeLatexSpecials | Escape special LaTeX characters for use in LaTeX labels |
| extract.loop | Extract a single loop from an object of class 'cmiloop' |
| extract_mass | generic function to extract a fitted mass |
| extract_mass.effectivemassfit | specialisation of extract_mass to objects of type... |
| extract_mass.matrixfit | specialisation of extract_mass to objects of type 'matrixfit' |
| extract.obs | Extract One or More Gamma Combinations from am CMI Correlator |
| extractSingleCor.cf | extract one single correlator object as 'cf' object from a... |
| fit.cosh | Fits a sum of several 'cosh'-functions |
| fit.effectivemass | Fits a constant to effective mass data |
| fit.plateau2cf | fits a plateau to an object of class 'cf' |
| foldr1 | Folds the non-empty list with the binary function |
| fs.a0 | Finite Size Corrections to qcotdelta for I=2 pipi near... |
| fs.mpia0 | Finite Size Corrections to qcotdelta for I=2 pipi near... |
| fs.qcotdelta | Finite Size Corrections to qcotdelta for I=2 pipi near... |
| g1 | g1 |
| getorderedconfignumbers | Creates an ordered vector of gauge config file numbers |
| getorderedfilelist | Creates an ordered filelist from a basename and a path |
| get_plotdata_raw_cf | extract data from 'raw_cf' in format convenient to plot |
| gevp | solve GEVP for correlator matrix |
| gevp2amplitude | Extracts physical amplitudes from a GEVP |
| gevp2cf | Extracts a principle correlator from a GEVEP |
| gevp.hankel | GEVP method based on Hankel matrices. |
| gevp.hankel_summed | GEVP method based on Hankel matrices. |
| gm | List of arrays of gamma structures |
| gm_mu | Accessor function for 'gm' |
| h5_get_dataset | get dataset from HDF5 file |
| h5_names_exist | check if group names exist in HDF5 file |
| hadron | The Hadron Package |
| hankel2cf | hankel2cf |
| hankel2effectivemass | hankel2effectivemass |
| hankeldensity2effectivemass | hankeldensity2effectivemass |
| has_icf | Checks whether the cf object contains an imaginary part |
| idx_matrix.raw_cf | Construct the tensor index set for the entire raw correlator |
| InternalHadronFunctions | Internal Hadron Functions |
| int_idx_matrix.raw_cf | Construct tensor index set for the internal degrees of... |
| invalidate.samples.cf | Invalidate samples |
| invcosh | numerically invert the cosh function for the mass |
| invertCovMatrix | Inverts the covariance matrix for noisy data |
| is.cf | Checks whether an object is a cf |
| is_empty.cf | Checks whether the cf object contains no data |
| is_empty.raw_cf | check if an obect is of class 'raw_cf' and empty otherwise |
| is.raw_cf | check if an object is of class 'raw_cf' |
| jackknife-after-bootstrap | jackknife-after-bootstrap analysis |
| jackknife.cf | jackknife a set of correlation functions |
| jackknife_cov | jackknife_cov |
| jackknife_error | Estimates error from jackknife samples |
| loop_2pt | compute two-point correlation function between quark loops |
| loopdata | Sample loop data |
| loop_spin_project | spin projection of quark loop data |
| loop_stochav | average over stochastic samples of loop |
| loop_vev_subtract | subtract vev from loop data |
| make_parind | Create a parameter index matrix for 'matrixfit' |
| make_parlist | Create a parameter list for 'matrixfit' |
| matrixfit | Routine For A Factorising Matrix Fit |
| matrixModel | Correlator matrix model. |
| mom_combinations | Generate table of momentum component combinations |
| mul.cf | Arithmetically scale a correlator by a scalar a |
| mul.raw_cf | scale 'raw_cf' data |
| new_matrixfit | perform a factorising fit of a matrix of correlation... |
| old_removeTemporal.cf | Remove temporal states |
| onlinemeas | determines pion mass and pcac mass from online measured... |
| overview_plot_raw_cf | create convenient overview plots for a 'raw_cf' object |
| parametric.bootstrap | Parametric bootstrap |
| parametric.bootstrap.cov | Parametric bootstrap with covariance |
| parametric.nlsfit | NLS fit with parametric bootstrap |
| parametric.nlsfit.cov | parametric.nlsfit.cov |
| pcac | Computes the pcac mass |
| pcacfit | pcacfit |
| pcModel | Principal correlator two state model. |
| plaq.sample | Sample plaquette time series |
| plot.averx | Plots averx data |
| plot.bootstrapfit | Plot a bootstrap NLS fit |
| plot.cf | Plot a correlation function |
| plot.cfit | plot.c1fit |
| plot.coshfit | Plot a cosh-fit |
| plot.effectivemass | plot.effectivemass |
| plot.effmass | plot.effmass |
| plot_eigenvalue_timeseries | plot_eigenvalue_timeseries |
| plot.gevp.amplitude | plot.gevp.amplitude |
| plot.hadronacf | plot.hadronacf |
| plot_hankel_spectrum | plot_hankel_spectrum |
| plothlinewitherror | plothlinewitherror |
| plot.massfit | plot.massfit |
| plot.matrixfit | Plot a matrixfit |
| plot.ofit | plot.ofit |
| plot.outputdata | Plot Command For Class Ouputdata |
| plot.pionff | plot.pionff |
| plot.raw_cf | plot all correlators in 'raw_cf' object |
| plot_timeseries | plot_timeseries |
| plot.uwerr | Plot Command For Class UWerr |
| plotwitherror | Plot Command For XY Plots With Error Bars |
| plus-.cf | Arithmetically add correlators |
| plus-.raw_cf | add two 'raw_cf' objects |
| pointswithslantederror | pointswithslantederror |
| predict.bootstrapfit | Predict values for bootstrapfit |
| print.bootstrapfit | Print a bootstrap NLS fit |
| print.cf | print.cf |
| print.effectivemassfit | print.effectivemassfit |
| print.ofit | print.ofit |
| print.raw_cf | Print summary of data contained in 'raw_cf' container |
| pscor.sample | Sample pseudoscalar correlator |
| raw_cf | Container for raw correlation functions |
| raw_cf_data | Original data mixin constructor for 'raw_cf' |
| raw_cf_meta | 'raw_cf' metadata mixin constructor |
| raw_cf_to_cf | Extract a particular internal component of a 'raw_cf' into a... |
| readbinarycf | read correlation function from binary files |
| readbinarydisc | read disconnected loops from binary files |
| readbinarysamples | Read binary correlation function by sample |
| readcmidisc | reads disconnected loops in cmi format |
| readcmifiles | Read Single Data Files in Chris Michael Format |
| readgradflow | Read Gradient Flow Output Files in tmLQCD format |
| readhlcor | readhlcor |
| readnissatextcf | reader for Nissa text format correlation functions |
| readoutputdata | Read Data In output.data Format of tmLQCD |
| readtextcf | Read correlator data from single file |
| removeTemporal.cf | Remove Thermal States by Weighting and Shifting |
| resample_hankel | Resample bootstrap samples in Hankel effmass |
| resampling_is_compatible | Checks whether the resampling of two cf objects is compatible |
| resampling_is_concatenable | Checks whether the resampling of two cf objects is... |
| residual_plot | residual_plot |
| restore_seed | Restore random number generator state |
| samplecf | Sample cf data |
| shift.cf | shift a correlation function by 'places' time-slices |
| shift.raw_cf | shift a 'raw_cf' correlation function by 'places' time-slices |
| simple.nlsfit | NLS fit with without bootstrap |
| slash-.cf | Divide two cf objects by each other measurement by... |
| slash-.raw_cf | divide two 'raw_cf' objects |
| store_correl | Store a 'raw_cf' correlator in an associative array together... |
| string2error | string2error |
| subtract.excitedstates | Substract excited states. |
| summary.bootstrapfit | Summarize a bootstrap NLS fit |
| summary.cf | summary.cf |
| summary.coshfit | Summarize a cosh-fit |
| summary.effectivemass | summary.effectivemass |
| summary.effectivemassfit | summary.effectivemassfit |
| summary.gevp.amplitude | summary.gevp.amplitude |
| summary.hadronacf | summary.hadronacf |
| summary.hankel_summed | summary.hankel_summed |
| summary.matrixfit | summary.matrixfit |
| summary.ofit | summary.ofit |
| summary.raw_cf | Print summary of data contained in 'raw_cf' container |
| summary.uwerr | summary.uwerr |
| swap_seed | Set seed and store a seed which can be used to reset the... |
| symmetrise.cf | Average backward and forward-dominated parts of the... |
| takeTimeDiff.cf | Take time difference |
| tex.catwitherror | paste a number with error in tex-ready format |
| tikz.finalize | tikz.finalize |
| tikz.init | tikz.init |
| times-.raw_cf | multiply two 'raw_cf' objects |
| unsymmetrise.cf | Unfold a correlation function which has been symmetrised |
| uwerr | Time Series Analysis With Gamma Method |
| uwerr.cf | uwerr.cf |
| uwerr.raw_cf | Gamma method analysis on all time-slices in a 'raw_cf' object |
| weight.cf | Weight a correlation function |
| weight_shift_reweight.cf | Weight-shift-reweight a correlation function |
| zetazp | Computes the running of Z_P from scale mu0 to scale mu2 |
