hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data

Install the latest version of this package by entering the following in R:
install.packages("hsphase")
AuthorMohammad Ferdosi <mferdosi@myune.edu.au>, Cedric Gondro <cgondro2@une.edu.au>
Date of publication2016-12-05 18:28:47
MaintainerMohammad Ferdosi <mferdosi@myune.edu.au>
LicenseGPL (>= 3)
Version2.0.1

View on CRAN

Files

inst
inst/CITATION
inst/doc
inst/doc/hsphase.R
inst/doc/hsphase.pdf
inst/doc/hsphase.Rnw
src
src/co.h
src/Makevars
src/block4Phase.cpp
src/TypeConversion.h
src/MAF.cpp
src/Ohd.cpp
src/oh.h
src/TypeConversion.cpp
src/FastDist.cpp
src/swDetect.cpp
src/memory.h
src/hsp.h
src/co.cpp
src/hsp.cpp
src/swDetect.h
src/diag.h
src/Ohd.h
src/main.cpp
src/MAF.h
src/diag.cpp
src/block.cpp
src/memory.cpp
src/Makevars.win
src/block4Phase.h
src/FastDist.h
src/oh.cpp
src/block.h
NAMESPACE
demo
demo/hsphase.R
demo/00Index
data
data/pedigree.txt.gz
data/genotypes.rda
data/map.txt.gz
R
R/ohg.R R/prSimple.R R/hss.R R/bmh.R R/impute.R R/ohd.R R/co.R R/rplot.R R/hh.R R/fastDist.R R/pogc.R R/simulateHalfsib.R R/hsphase.R R/prManual.R R/namingInferedPedigree.R R/cs.R R/prCalus.R R/ohplot.R R/para.R R/ssp.R R/maf.R R/rpohhsphase.R R/aio.R R/rpoh.R R/imageplot.R
vignettes
vignettes/hsphase.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/pm.Rd man/aio.Rd man/cs.Rd man/phf.Rd man/bmh.Rd man/map.Rd man/pogc.Rd man/ohd.Rd man/ohplot.Rd man/rpoh.Rd man/readGenotype.Rd man/recombinations.Rd man/genotypes.Rd man/ohg.Rd man/co.Rd man/pedigreeNaming.Rd man/para.Rd man/pedigree.Rd man/hh.Rd man/hbp.Rd man/imageplot.Rd man/impute.Rd man/ssp.Rd man/hss.Rd man/rplot.Rd man/hsphase-package.Rd

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