hsphase: Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data

AuthorMohammad Ferdosi <mferdosi@myune.edu.au>, Cedric Gondro <cgondro2@une.edu.au>
Date of publication2016-12-05 18:28:47
MaintainerMohammad Ferdosi <mferdosi@myune.edu.au>
LicenseGPL (>= 3)
Version2.0.1

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Files

hsphase
hsphase/inst
hsphase/inst/CITATION
hsphase/inst/doc
hsphase/inst/doc/hsphase.R
hsphase/inst/doc/hsphase.pdf
hsphase/inst/doc/hsphase.Rnw
hsphase/src
hsphase/src/co.h
hsphase/src/Makevars
hsphase/src/block4Phase.cpp
hsphase/src/TypeConversion.h
hsphase/src/MAF.cpp
hsphase/src/Ohd.cpp
hsphase/src/oh.h
hsphase/src/TypeConversion.cpp
hsphase/src/FastDist.cpp
hsphase/src/swDetect.cpp
hsphase/src/memory.h
hsphase/src/hsp.h
hsphase/src/co.cpp
hsphase/src/hsp.cpp
hsphase/src/swDetect.h
hsphase/src/diag.h
hsphase/src/Ohd.h
hsphase/src/main.cpp
hsphase/src/MAF.h
hsphase/src/diag.cpp
hsphase/src/block.cpp
hsphase/src/memory.cpp
hsphase/src/Makevars.win
hsphase/src/block4Phase.h
hsphase/src/FastDist.h
hsphase/src/oh.cpp
hsphase/src/block.h
hsphase/NAMESPACE
hsphase/demo
hsphase/demo/hsphase.R
hsphase/demo/00Index
hsphase/data
hsphase/data/pedigree.txt.gz
hsphase/data/genotypes.rda
hsphase/data/map.txt.gz
hsphase/R
hsphase/R/ohg.R hsphase/R/prSimple.R hsphase/R/hss.R hsphase/R/bmh.R hsphase/R/impute.R hsphase/R/ohd.R hsphase/R/co.R hsphase/R/rplot.R hsphase/R/hh.R hsphase/R/fastDist.R hsphase/R/pogc.R hsphase/R/simulateHalfsib.R hsphase/R/hsphase.R hsphase/R/prManual.R hsphase/R/namingInferedPedigree.R hsphase/R/cs.R hsphase/R/prCalus.R hsphase/R/ohplot.R hsphase/R/para.R hsphase/R/ssp.R hsphase/R/maf.R hsphase/R/rpohhsphase.R hsphase/R/aio.R hsphase/R/rpoh.R hsphase/R/imageplot.R
hsphase/vignettes
hsphase/vignettes/hsphase.Rnw
hsphase/MD5
hsphase/build
hsphase/build/vignette.rds
hsphase/DESCRIPTION
hsphase/man
hsphase/man/pm.Rd hsphase/man/aio.Rd hsphase/man/cs.Rd hsphase/man/phf.Rd hsphase/man/bmh.Rd hsphase/man/map.Rd hsphase/man/pogc.Rd hsphase/man/ohd.Rd hsphase/man/ohplot.Rd hsphase/man/rpoh.Rd hsphase/man/readGenotype.Rd hsphase/man/recombinations.Rd hsphase/man/genotypes.Rd hsphase/man/ohg.Rd hsphase/man/co.Rd hsphase/man/pedigreeNaming.Rd hsphase/man/para.Rd hsphase/man/pedigree.Rd hsphase/man/hh.Rd hsphase/man/hbp.Rd hsphase/man/imageplot.Rd hsphase/man/impute.Rd hsphase/man/ssp.Rd hsphase/man/hss.Rd hsphase/man/rplot.Rd hsphase/man/hsphase-package.Rd

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